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Bielefeld-Gießen Resource Center for Microbial Bioinformatics (BiGi)

Date Topic Location
20-26 Sep 2015 de.NBI Late Summer School 2015 in Microbial Bioinformatics Gießen
03-04 Nov 2015 CLC workshop Gießen
16-17 Nov 2015 High-throughput genome analysis and comparative genomics Gießen
23-25 Nov 2015 Introduction into targeted and untargeted metagenome analysis Bielefeld
29 Aug-2 Sep 2016 Targeted and Untargeted Metagenome Analysis Bielefeld
12 Sep 2016 Cloud Computing Tutorial Berlin
21-23 Sep 2016 2nd Genomics training course Gießen
26-30 Sep 2016 de.NBI Summer School 2016 - From Big Data to Big Insights Dagstuhl castle
(Wadern)
13 Oct 2016 Polyomics data integration and analysis Bielefeld
07-09 Jun 2017 3rd Genomics training course Gießen
16 Jun 2017 MetaProteomeAnalyzer Workshop - 2nd International Metaproteomics Symposium Alghero

Bioinformatics for Proteomics (BioInfra.Prot)

Date Topic Location
16-18 Sep 2015 8th Open MS User Meeting Bochum
27 Sep 2015 Fundamentals of Proteome Bioinformatics Revisited Dortmund
28 Feb 2016 Spezielle Aspekte von Bioinformatik - Methoden in der MS–basierten Proteomik Hamburg
26-30 Sep 2016 de.NBI Summer School 2016 - From Big Data to Big Insights Dagstuhl castle
(Wadern)
21 Nov 2016 Differential analysis of proteomic data using R Bochum
10 Jan 2017 Deployment of bioinformatics tools and services from Computational Proteomics – Part II: Standard formats in proteomics, data conversions and repository upload  EuBIC Winter School Semmering
05 Mar 2017 Lipidomics: A Workshop about Lipid Function & Analysis Kiel
03 Apr 2017 Special Aspects of Bioinformatics for Proteomics - Proteomic Forum 2017 Potsdam
04 Apr 2017 Protein identification in mass spectrometry data using SearchGUI and PeptideShaker - Proteomic Forum 2017 Potsdam

Center for Biological Data (BioData)

Date Topic Location
13-14 Oct 2015 Training in BRENDA/BacDive modules Braunschweig
01-04 Dec 2015 ARB/SILVA and BacDive: Training on microbial phylogeny and diversity analysis Bremen
02 Nov 2016 Introduction into the bacterial diversity metadatabase BacDive Braunschweig
22-25 Nov 2016 From Primer to Paper: Training in Biodiversity Analysis using NGS Amplicon Data Bremen
30-31 Mar 2017 BRENDA Workshop 2017 Braunschweig

Center for Integrative Bioinformatics (CIBI)

Date Topic Location
16-18 Sep 2015 8th OpenMS User Meeting Bochum
27 Sep 2015 Fundamentals of Proteome Bioinformatics Revisited Dortmund
12-22 Jan 2016 KNIME BioInformatics Hackathon Konstanz
22-26 Feb 2016 KNIME Spring Summit Workshop 2016 Berlin
28 Feb 2016 Von Spektren zu Ergebnissen: Effiziente Analyse von massenspektrometrischen Daten mit Workflows Hamburg
13-18 Mar 2016 OpenMS Developer Meeting Milford Hall
30 Mar-01 Apr 2016 SeqAn de.NBI User Meeting Berlin
26 Apr 2016 Workflow based metabolomics a de.NBI teaching event at the Metabolomics in Biomedical Research workshop Tübingen
05-14 Jul 2016 Hackathon - KNIME & Image Processing Konstanz
12 Sep 2016 Label-free quantification using OpenMS and workflows Berlin
21-23 Sep 2016 9th OpenMS User Meeting Tübingen
26-30 Sep 2016 de.NBI Summer School 2016 - From Big Data to Big Insights Dagstuhl castle
(Wadern)
08-09 Dec 2016 IPB Metabolomics workshop 2016 - Christmas Edition Halle (Saale)
06-16 Dec 2016 Hackathon – Fiji, ImageJ, and KNIME development Dresden
12 Jan 2017 Label-free quantification and quality control with OpenMS Semmering
17 Mar 2017 Introduction into the Analysis of Mass Spectrometry and Sequence Data with KNIME Berlin
03 Apr 2017 OpenMS & KNIME - Proteomic Forum 2017 Potsdam
01-03 May 2017 Proteomics and Metabolomics with OpenMS Boston
02-03 May 2017 MoMA Workshop Basel

de.NBI Systems Biology Service Center (de.NBI-SysBio)

Date Topic Location
20-26 Sep 2015 de.NBI Late Summer School 2015 in Microbial Bioinformatics Gießen
30-31 May 2016 Kinetics on the move: practical workshop on data and tools for quantitative modeling Heidelberg
16 Sep 2016 ICSB2016 Tutorial: Modelling and Simulation Tools in Systems Biology Barcelona

German Crop BioGreenformatics Network (GCBN)

Date Topic Location
07-08 Dec 2015 Data Management for Plant Genomics & Phenomics - Standards, Tools and Infrastructures München
05-07 Oct 2016 NGS Workshop 2016 - The path from raw sequences to biological conclusions Aachen
19-21 Oct 2016 Big Data Training Course in Plant Genomics Gatersleben

Heidelberg Center for Human Bioinformatics (HD-HuB)

Date Topic Location
07-08 Oct 2015 Data Interpretation for NGS Data in Cancer Research Heidelberg
02-04 Dec 2015 Bioimage Analysis Workshop Heidelberg
10-15 Jul 2016 CSAMA 2016 - Statistics and Computing in Genome Data Science Padova
19-21 Sep 2016 Software Carpentry Workshop Heidelberg
28-30 Sep 2016 Data Interpretation of RNASeq and Bisulfite Sequencing Data in Cancer Research Heidelberg
11-12 Oct 2016 Microscopy Image Analysis Course Heidelberg
13-14 Oct 2016 Data Interpretation of Whole-Genome and Exome Sequencing Data in Cancer Research Heidelberg
26-27 Oct 2016 Software Carpentry's Workshop Würzburg
05-06 Dec 2016 2nd de.NBI Bioimage Analysis Workshop Heidelberg
03-04 Apr 2017 Advanced R Programming Heidelberg
11-16 Jun 2017 CSAMA 2017 - Statistical Data Analysis for Genome Scale Biology Bressanone-Brixen
19-20 Jun 2017 Software Carpentry Course Berlin

RNA Bioinformatics Center (RBC)

Date Topic Location
16-17 Jul 2015 RNAseq workshop Freiburg
14-15 Sep 2015 Bioinformatics Hackathon Berlin
20-26 Sep 2015 de.NBI Late Summer School 2015 in Microbial Bioinformatics Gießen
21-25 Sep 2015 NGS hands-on workshop Freiburg
18-24 Oct 2015 Computational Genomics hands-on workshop Berlin
15-16 Dec 2015 Python workshop Freiburg
22-26 Feb 2016 Galaxy workshop on HTS data analysis Freiburg
17-18 Aug 2016 BIMSB Galaxy Workshop – Using Galaxy for RNA-seq analysis Berlin
12-23 Sep 2016 Computational genomics approaches to precision medicine Berlin
19-23 Sep 2016 2nd Galaxy Workshop on HTS data analysis Freiburg
26-30 Sep 2016 Summer School: RNA-Seq Leipzig
27-28 Sep 2016 Hackathon on Conda packaging for Proteomics Online
06-07 Oct 2016 Galaxy training contribution fest Online
02-03 Nov 2016 Bioconda Contribution Fest Online
15-16 Dec 2016 Galaxy RNA-sequencing data analysis workshop Freiburg
09-10 Jan 2017 QIIME Contribution Fest Online
16-19 Jan 2017 European Galaxy Developer Workshop Illkirch/Strasbourg
13-17 Feb 2017 3rd Galaxy High-Throughput-Sequencing (HTS) data analysis workshop Freiburg
04-20 Mar 2017 6th Programming for Evolutionary Biology Course Leipzig
09-10 Mar 2017 1st Freiburg Software Carpentry Course Freiburg
31 Mar 2017 Using Next Generation Sequencing Data Analysis for the Clinic - CASyM winter school of Systems Medicine Ljubljana
04-05 Apr 2017 de.NBI - ELIXIR AAI Codefest - Make your services accessible via ELIXIR AAI Freiburg
22-24 May 2017 ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use Cambridge

514206

2017 Topic Location
09-10 Jan QIIME Contribution Fest Online
10 Jan Deployment of bioinformatics tools and services from Computational Proteomics – Part II: Standard formats in proteomics, data conversions and repository upload  EuBIC Winter School Semmering
12 Jan Label-free quantification and quality control with OpenMS Semmering
16-19 Jan European Galaxy Developer Workshop Illkirch/Strasbourg
13-17 Feb 3rd Galaxy High-Throughput-Sequencing (HTS) data analysis workshop Freiburg
04-20 Mar 6th Programming for Evolutionary Biology Course Leipzig
05 Mar Lipidomics: A Workshop about Lipid Function & Analysis Kiel
09-10 Mar 1st Freiburg Software Carpentry Course Freiburg
17 Mar Introduction into the Analysis of Mass Spectrometry and Sequence Data with KNIME Berlin
20-26 Mar SeqAn Developer Retreat Lissabon
26-31 Mar OpenMS Developer Retreat Troia
30-31 Mar BRENDA Workshop 2017 Braunschweig
31 Mar Using Next Generation Sequencing Data Analysis for the Clinic - CASyM winter school of Systems Medicine Ljubljana
03 Apr Special Aspects of Bioinformatics for Proteomics - Proteomic Forum 2017 Potsdam
03 Apr OpenMS & KNIME - Proteomic Forum 2017 Potsdam
03-04 Apr Advanced R Programming Heidelberg
04 Apr Protein identification in mass spectrometry data using SearchGUI and PeptideShaker - Proteomic Forum 2017 Potsdam
04-05 Apr de.NBI - ELIXIR AAI Codefest - Make your services accessible via ELIXIR AAI Freiburg
01-03 May Proteomics and Metabolomics with OpenMS Boston
02-03 May MoMA Workshop Basel
22-24 May ELIXIR/GOBLET/GTN hackathon for Galaxy training material re-use Cambridge
07-09 Jun 3rd Genomics training course Gießen
11-16 Jun CSAMA 2017 - Statistical Data Analysis for Genome Scale Biology Bressanone-Brixen
16 Jun MetaProteomeAnalyzer Workshop - 2nd International Metaproteomics Symposium Alghero
19-20 Jun Software Carpentry Course Berlin

 

2016 Topic Location
12-22 Jan KNIME BioInformatics Hackathon Konstanz
22-26 Feb Galaxy workshop on HTS data analysis Freiburg
22-26 Feb KNIME Spring Summit Workshop 2016 Berlin
28 Feb Spezielle Aspekte von Bioinformatik - Methoden in der MS–basierten Proteomik Hamburg
28 Feb Von Spektren zu Ergebnissen: Effiziente Analyse von massenspektrometrischen Daten mit Workflows Hamburg
13-18 Mar OpenMS Developer Meeting Milford Hall
30 Mar-01 Apr SeqAn de.NBI User Meeting Berlin
26 Apr Workflow based metabolomics a de.NBI teaching event at the Metabolomics in Biomedical Research workshop Tübingen
30-31 May Kinetics on the move: practical workshop on data and tools for quantitative modeling Heidelberg
05-14 Jul Hackathon - KNIME & Image Processing Konstanz
10-15 Jul CSAMA 2016 - Statistics and Computing in Genome Data Science Padova
17-18 Aug BIMSB Galaxy Workshop – Using Galaxy for RNA-seq analysis Berlin
29 Aug-2 Sep Targeted and Untargeted Metagenome Analysis Bielefeld
12 Sep Cloud Computing Tutorial Berlin
12 Sep Label-free quantification using OpenMS and workflows Berlin
12-23 Sep Computational genomics approaches to precision medicine Berlin
16 Sep ICSB2016 Tutorial: Modelling and Simulation Tools in Systems Biology Barcelona
19-21 Sep Software Carpentry Workshop Heidelberg
19-23 Sep 2nd Galaxy Workshop on HTS data analysis Freiburg
21-23 Sep 9th OpenMS User Meeting Tübingen
21-23 Sep 2nd Genomics training course Gießen
26-30 Sep de.NBI Summer School 2016 - From Big Data to Big Insights Dagstuhl castle
(Wadern)
26-30 Sep Summer School: RNA-Seq Leipzig
27-28 Sep Hackathon on Conda packaging for Proteomics Online
28-30 Sep Data Interpretation of RNASeq and Bisulfite Sequencing Data in Cancer Research Heidelberg
05-07 Oct NGS Workshop 2016 - The path from raw sequences to biological conclusions Aachen
06-07 Oct Galaxy training contribution fest Online
11-12 Oct Microscopy Image Analysis Course Heidelberg
13 Oct Polyomics data integration and analysis Bielefeld
13-14 Oct Data Interpretation of Whole-Genome and Exome Sequencing Data in Cancer Research Heidelberg
19-21 Oct Big Data Training Course in Plant Genomics Gatersleben
26-27 Oct Software Carpentry's Workshop Würzburg
02 Nov Introduction into the bacterial diversity metadatabase BacDive Braunschweig
02-03 Nov Bioconda Contribution Fest Online
21 Nov Differential analysis of proteomic data using R Bochum
22-25 Nov From Primer to Paper: Training in Biodiversity Analysis using NGS Amplicon Data Bremen
05-06 Dec 2nd de.NBI Bioimage Analysis Workshop Heidelberg
08-09 Dec IPB Metabolomics workshop 2016 - Christmas Edition Halle (Saale)
06-16 Dec Hackathon – Fiji, ImageJ, and KNIME development Dresden
15-16 Dec Galaxy RNA-sequencing data analysis workshop Freiburg

 

2015 Topic Location
16-17 Jul RNAseq workshop Freiburg
14-15 Sep Bioinformatics Hackathon Berlin
16-18 Sep 8th Open MS User Meeting Bochum
20-26 Sep de.NBI Late Summer School 2015 in Microbial Bioinformatics Gießen
21-25 Sep NGS hands-on workshop Freiburg
27 Sep Fundamentals of Proteome Bioinformatics Revisited Dortmund
07-08 Oct Data Interpretation for NGS Data in Cancer Research Heidelberg
13-14 Oct Training in BRENDA/BacDive modules Braunschweig
18-24 Oct Computational Genomics hands-on workshop Berlin
03-04 Nov CLC workshop Gießen
16-17 Nov High-throughput genome analysis and comparative genomics Gießen
23-25 Nov Introduction into targeted and untargeted metagenome
analysis
Bielefeld
01-04 Dec ARB/SILVA and BacDive: Training on microbial phylogeny and diversity analysis Bremen
02-04 Dec Bioimage Analysis Workshop Heidelberg
07-08 Dec Data Management for Plant Genomics & Phenomics - Standards, Tools and Infrastructures München
15-16 Dec Python workshop Freiburg

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2017 Topic Location
Postponed Analysis, visualization and integration of multi-level omics data Bielefeld
18-24 Jun Fiji Developer Training (Learnathon) Dresden
25 Jun - 01 Jul de.NBI Summer School on Cloud Computing for Bioinformatics Gießen
26-28 Jun Introduction to Linux & Version Control Heidelberg
28 Jun Advanced customisation of a Galaxy instance - GCC Montpellier
28 Jun Galaxy for Proteomics - GCC Montpellier
28 Jun Galaxy for Training & Education - GCC Montpellier
28 Jun How to analyze metagenomic and amplicon data in Galaxy - GCC Montpellier
29 Jun BIMSB Galaxy Course - using Galaxy for RNA-seq analysis Berlin
03-04 Jul Workflow Management with CWL: Bring your own Workflow Heidelberg
03-05 Jul 3rd de.NBI Bioimage Analysis Workshop Heidelberg
21 Jul Making Galaxy work for you - ISMB 2017 Prag
26-28 Jul Introduction to Python programming Heidelberg
26-28 Jul Data Science for the Life Sciences Konstanz
06 Aug COMBINE Tutorial - Modelling and Simulation Tools in Systems Biology - ICSB 2017 Blacksburg
07 Aug COPASI Tutorial - ICSB 2017 Blacksburg
21-25 Aug Deep Learning with Keras Dresden
12-13 Sep Stoichiometric and kinetic modeling of biochemical networks using CellNetAnalyzer and COPASI Heidelberg
18-20 Sep Tutorials @ GCB Tübingen
18-22 Sep 4th Galaxy high-throughput sequencing (HTS) data analysis workshop Freiburg
20-29 Sep de.NBI, DAIS & KNIME Hackathon Konstanz
25-29 Sep de.NBI Late Summer School 2017 - Computational genomics and RNA biology Berlin
25-27 Sep PLANT 2030 Summer School – Basic Bioinformatics training for Biologists Gatersleben
18-20 Oct Software Carpentry Workshop Heidelberg
06-10 Nov From Primer to Paper: Training in Microbial Biodiversity Analysis Bremen
15-16 Nov de.NBI - GFBio & Friends Data Management Workshop Bremen

 Download: Training course insert for de.NBI flyer

Planned for '17 Topic Location
Q3 Introduction into targeted and untargeted metagenome analysis Bielefeld or Gießen
Q3 Data Interpretation of RNASeq and Bisulfite Sequencing Data in Cancer Research Heidelberg
Q3 Protein Bioinformatics Heidelberg
Q3 The path from raw sequences to biological conclusions Jülich
Q3 or Q4 OpenMS User Meeting ?
Q4 Galaxy Workshop Berlin
Q4 Introduction to BRENDA and EnzymeStructures Braunschweig
Q4 Microscopy Image Analysis Course Heidelberg
Q4 Data Interpretation of Whole-Genome and Exome Sequencing Data in Cancer Research Heidelberg
Q4 Cloud Computing Tutorial Bielefeld or Gießen
Q4 RNAseq Workshop Freiburg
Q4 Differential analysis of proteomic data using R Bochum

514206

de.NBI collects and hosts educational materials related to bioinformatics, some of which have been developed specifically within the project. Training activities are focused on supporting and training end users through training courses, webinars, and online training. Life science researchers will thus be enabled to exploit their data more effectively by applying tools, standards and compute services provided by de.NBI. The training pages list training resources offered by all de.NBI units with short descriptions including information on the corresponding training course and to the corresponding tools.

To effectively coordinate training courses, de.NBI has established the Special Interest Group 3 (SIG3 - Training and Education). SIG3 is composed of training experts from each de.NBI unit. The SIG3 members meet twice a year to share experience, coordinate training activities and plan new training activities.

We also welcome requests for additional materials.

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