Educators:
Dr. Alisandra Denton, Prof. Björn Usadel, et al. (GCBN)
Date:
5.10.-7.10.2016
Location:
RWTH Aachen University
Institute for Biology I
Worringer Weg. 3, Room 3.012
Contents:
- A slight introduction to Linux
- NGS data handling and formats (QC, trimming, etc.)
- RNASeq data evaluation and interpretation and SNP calling
The course is plant centric as it is organized by the GCBN
Learning goals:
- Understand NGS data formats and qualities
- Basic understanding of QC and quality filtering
- Ability to analyze RNA seq data
- Ability to call SNPs using simple pipelines
Prerequisites:
An interest in NGS data
Keywords:
NGS, RNASeq, SNP calling
Tools:
trimmomatic, MapMan, samtools, bowtie2/bwa, R/Bioconductor
Contact:
Alisandra Denton