Literature archive

Articles about the de.NBI network:

de.NBI Cloud Brochure 08/22, "Development and Operation of the Federated de.NBI Cloud" by de.NBI Cloud Group
Kompetenznetzwerk Umweltwirtschaft.NRW (2022): Innovationsradar zur Klimawende 05/22, "Das Deutsche Netzwerk für Bioinformatik-Infrastruktur de.NBI" by A. Pühler
de.NBI AI Bochure 11/21, "Future-oriented Analysis of Life Sciences Data using Artificial Intelligence" by de.NBI network
gesundhyte.de 12/21,"Zukunftsorientierte Analyse von Forschungsdaten, Mitglieder des de.NBI-Netzwerks nutzen KI-basierte Technologien" by V. Ortseifen, P. Belmann, A. Pühler
Biologie in unserer Zeit 08/21, "Verstetigung des de.NBI-Netzwerks" by A. Pühler
Briefings in Bioinformatics, 02/21, "Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases", by G., W. Müller, K. Schork, J. Uszkoreit, A. Weidemann, U. Wittig, M. Rey, C. Quast, J. Felden, F. O. Glöckner, M. Lange, D. Arend, S. Beier, A. Junker, U. Scholz, D. Schüler, H. A. Kestler, D. Wibberg, A. Pühler, S. Twardziok, J. Eils, R. Eils, S. Hoffmann, M. Eisenacher, M. Turewicz
de.NBI COVID-19 Brochure 01/21, "Data analysis for the COVID-19 research - Contributions of the German Network for Bioinformatics Infrastructure, by de.NBI network
gesundhyte.de 12/20, "Ein Motor für die Analyse von COVID-19-Forschungsdaten", by A. Pühler, I. Maus, V. Ortseifen, A. Tauch
gesundhyte.de 12/20, "de.NBI Cloud als akademische Lösung für Lebenswissenschaftler", by C. Lawerenz, A. Sczyrba
gesundhyte.de 12/20, "Bioinformatik: Junge Frauen brauchen Vorbilder", Interview with Janine Felden
de.NBI Highlight Brochure (English) 08/20, "Data analysis for insights into complex biological systems - Highlights from the German Network for Bioinformatics Infrastructure", by all de.NBI members
Deutsche Universitätszeitung (DUZ) 07/20, "Es muss sehr viel mehr passieren" - Interview with A. Pühler
de.NBI Highlight Brochure (German) 02/20, "Von der Datenanalyse zum verstehen komplexer biologischer Systeme - Highlights aus dem Deutschen Netzwerk für Bioinformatik-Infrastruktur", by all de.NBI members
Laborjournal 12/2019: "Auf das richtige Werkzeug kommt es an“ (Methoden-Special im Laborjournal), de.NBI and ELIXIR mentioned as resources p 50 ff.
F1000 Research 11/19, "The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR" by D. Wibberg, B. Batut, P. Belmann, J. Blom, F. O. Glöckner, B. Grüning, N. Hoffmann, N. Kleinbölting, R. Rahn, M. Rey, U. Scholz, M. Sharan, A. Tauch, U. Trojahn, B. Usadel, O. Kohlbacher
F1000 Research 06/19, "de.NBI Cloud federation through ELIXIR AAI" by P. Belmann, B. Fischer, J. Krüger, H. Rasche, M. Prinz, M. Hanussek, M. Lang, F. Bartusch, B. Gläßle, J. Krüger, A. Pühler and A. Sczyrba
Plattform Life Sciences 01/19, "Auswertung großer Datenmengen in den Lebenswissenschaften", by A. Pühler
Biologie in unserer Zeit! 02/19, "Big Data in der Biologie: kein Problem mehr!", by B. Gemeinholzer, J. Nieschulze, A. Tauch, A. Goesmann
BIOSpektrum 11/18, "SILVA – Referenzdatensätze für den Nachweis von Mikroorganismen", by F. O. Glöckner & J. Peplies
Atlas of Science 08/18, "Bioinformatics solutions for big data analysis in life sciences presented by the German network for bioinformatics infrastructure", by A. Pühler & R. Alkhateeb
F1000 08/18, "Common ELIXIR Service for Researcher Authentication and Authorisation", among others by P. Belmann & A. Sczyrba
Cell Systems, 05/18, "Community-Driven Data Analysis training for Biology", among others B. Batut, A. Bagnacani, A. Erxleben, T. Houwaart, D. Yusuf, Galaxy Training Network, R. Backofen, and B. Grüning
Ärzteblatt 04/18, "Neue Open-Source-Plattform für die Analyse von Big Data in den Lebenswissenschaften", by B. Grüning
BIOSpektrum 04/18, "Umgang mit großen Datenmengen in den Lebenswissenschaften (Page 199)", by A. Pühler
Systembiologie 12/17, "BioInfra.Prot – Bioinformatik für die Proteomforschung", by M. Turewicz and M. Eisenacher
Systembiologie 12/17, "de.NBI erfolgreich etabliert", by Y. Pfeiffenschneider
Briefings in Bioinformatics 10/17, "A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects", by G. Mayer, C. Quast, J. Felden, M. Lange, M. Prinz, A. Pühler, C. Lawerenz, U. Scholz, F. O. Glöckner, W. Müller, K. Marcus, M. Eisenacher
de.NBI Handbook 09/17, "Handbook of the German Network for Bioinformatics Infrastructure", by all de.NBI members
Git Laborportal 04/17, "Cloud-Computing in der Bioinformatik", by C. Lawerenz, A. Sczyrba and A. Pühler
Briefings in Bioinformatics 04/17, "Bioinformatics in Germany: toward a national-level infrastructure", by A. Tauch
LaborPraxis 03/17, "Big Data im Life-Science-Labor", by Dr. Ilka Ottleben
Gesundheitsindustrie BW 03/17, "de.NBI – Netzwerk für Bioinformatik-Infrastruktur wird weiter ausgebaut", by H. Lehmann & O. Kohlbacher
BIOSpektrum 01/17, "de.NBI – ein Deutsches Netzwerk für Bioinformatik-Infrastruktur", by A. Pühler
Systembiologie 04/16, "Deutsches Netzwerk für Bioinformatik-Infrastruktur – de.NBI", by A. Pühler
Systembiologie 04/16, "RNA-Bioinformatik unter einem Dach – das RNA Bioinformatik Service Zentrum", by B. Grüning
Systembiologie 04/16, "BRENDA – Von der Datenbank zum Kompetenzzentrum", by D. Schomburg and I. Schomburg
Systembiologie 04/16, "NBI-SysBio – Der de.NBI Datenmanagement Knoten", by W. Müller
Systembiologie 04/16, "Entwicklung von Software-Lösungen für Mikrobielle Bioinformatik", by A. Goesmann
labor&more 02/16, "de.NBI und GFBio - Bioinformatische Infrastrukturen zum Management und zur Analyse großer biologischer Datenmengen in den Lebenswissenschaften", by A. Tauch and F. O. Glöckner
BIOSpektrum 02/15, "Deutsches Netzwerk für Bioinformatik-Infrastruktur (de.NBI) - Vernetzung von Bioinformatik-Infrastrukturen in Deutschland", by A. Pühler

Special Issue in Journal of Biotechnology - Vol 265, 10 November 2017

Bioinformatics Solutions for Big Data Analysis in Life Sciences presented by the German Network for Bioinformatics Infrastructure

Bioinformatics solutions for big data analysis in life sciences presented by the German network for bioinformatics infrastructure, A. Pühler
A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies, J. Yu, J. Blom, S.P. Glaeser, S. Jaenicke,T. Juhre, O. Rupp, O. Schwengers, A. Goesmann
Bioinformatics for NGS-based metagenomics and the application to biogas research, S. Jünemann, N. Kleinbölting, S. Jaenicke, C. Henke, J. Hassa, J. Nelkner, Y. Stolze, S.P. Albaum, A. Schlüter, A. Goesmann, A. Sczyrba, and J. Stoye
Challenges and perspectives of metaproteomic data analysis, R. Heyer, K. Schallert, R. Zoun, B. Becher, G. Saake, and D. Benndorf
Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives,T. Schmutzer, M.E. Bolger, S. Rudd, J. Chen, H. Gundlach, D. Arend, M. Oppermann, S. Weise, M. Lange, S. Spannagl, B. Usadel, K.F.X. Mayer, and U. Scholz
From plant genomes to phenotypes, M. Bolger, R. Schwacke, H. Gundlach, T. Schmutzer,J. Chen, D. Arend, M. Oppermann, S. Weise, M. Lange, F. Fiorani, M. Spannagl, U. Scholz, K. Mayer,and B. Usadel
OTP: An automatized system for managing and processing NGS data, E. Reisinger, L. Genthner, J. Kerssemakers, P. Kensche, S. Borufka, A. Jugold, A. Kling, M. Prinz, I. Scholz, G. Zipprich, R. Eils, C. Lawerenz and J. Eils
Phenotype databases for genetic screens in human cells, B. Rauscher, E. Valentini, U. Hardeland, Michael Boutros
Workflows for microscopy image analysis and cellular phenotyping,T. Wollmann, H. Erfle, R. Eils, K. Rohr, M. Gunkel
RNA-bioinformatics: Tools, services and databases for the analysis of RNA-based regulation, R. Backofen, J. Engelhardt, A. Erxleben, J. Fallmann, B. Grüning, U. Ohler, N. Rajewsky, and P.F. Stadler
Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments, S.C. Lott, M. Wolfien, K. Riege, A. Bagnacani, O. Wolkenhauer, S. Hoffmann, and W.R. Hess
Recent advances in RNA folding ,J. Fallmann, S. Will, J. Engelhardt, B. Grüning, R. Backofen, and P.F. Stadler
Strategies for analyzing bisulfite sequencing data, K. Wreczycka, A. Gosdschan, D. Yusuf, B. Grüning, Y. Assenov and A. Akalin
BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication, M.Turewicz, M. Kohl, M. Ahrens, G. J. Uszkoreit, W. Naboussi, T. Bracht, D.A. Megger, B. Sitek, K. Marcus and M. Eisenacher
Computational proteomics tools for identification and quality control, D. Kopczynski, A. Sickmann, and R. Ahrends
Lipidomics informatics for life-science, D. Schwudke, A. Shevchenko, N. Hoffmann, and R. Ahrends
Bioinformatics can boost metabolomics research, R. Meier, C. Ruttkies, H. Treutler and S. Neumann
OpenMS – A platform for reproducible analysis of mass spectrometry data, J. Pfeuffer, T. Sachsenberg, O. Alka, M. Walzer, A. Fillbrunn, L. Nilse, O. Schilling, K. Reinert and O. Kohlbacher
KNIME for reproducible cross-domain analysis of life science data , A. Fillbrunn, C. Dietz, J. Pfeuffer, R. Rahn, G.A. Landrun, and M.R. Berthold
The SeqAn C++ template library for efficient sequence analysis: A resource for programmers, K. Reinert, T.H. Dadi, M. Ehrhardt, H. Hauswedell, S. Mehringer, R. Rahn, J. Kim, C. Pockrandt, J. Winkler, E. Siragusa, G. Urgese and D. Weese
25 years of serving the community with ribosomal RNA gene reference databases and tools, F.O.Glöckner, P. Yilmaz, C. Quast, J.Gerken, A. Beccati, A. Ciuprina, G. Bruns, P. Yarza, J. Peplies, R. Westram and W. Ludwig
Terminology supported archiving and publication of environmental science data in PANGAEA, M.Diepenbroek, U. Schindler, R. Huber, S. Pesant, M. Stocker, J. Felden, M. Buss and M. Weinrebe
Mobilization and integration of bacterial phenotypic data—Enabling next generation biodiversity analysis through the BacDive metadatabase, L.C. Reimer, C. Söhngen, A. Vetcininova and Jörg Overmann
The BRENDA enzyme information system–From a database to an expert system, I. Schomburg, L. Jeske, M. Ulbrich, S. Placzek, A. Chang and D. Schomburg
From cheminformatics to structure-based design: Web services and desktop applications based on the NAOMI library, S. Betz, T. Inhester, F. Lauck, K. Sommer, M.M. von Behren, R. Fährrolfes, F. Flachsenberg, A. Meyder, E. Nittinger, T. Otto, M. Hilbig, K.T. Schomburg, A. Volkamer and M. Rarey
COPASI and its applications in biotechnology, F.T. Bergmann, S. Hoops, B. Klahn, U. Kummer, P. Mendes, J. Pahler and S. Sahle
Use of CellNetAnalyzer in biotechnology and metabolic engineering, A. von Kamp, S. Thiele, O. Hädicke and S. Klamt
Data management and data enrichment for systems biology projects, U. Wittig, M. Rey, A. Weidemann and W. Müller

: 13 September 2018