Educators:
Fabian Aicheler, Marc Rurik, Timo Sachsenberg (CIBI)
Date:
April 26, 2016, 13 am - 16 pm
Location:
CRONA, University Hospital Tübingen, Seminar room: 220 (level 4)
Contents:
This CIBI organized teaching event is targeted at experimentalists and data analysts interested in metabolomics workflow construction using KNIME and OpenMS.
We start with a gentle introduction to the powerful workflow system KNIME and the OpenMS pipeline tools. Hands-on material is provided and includes step-by-step instructions that guides participants with no or little background in the construction of basic analysis workflows. In addition to highly customizable workflows in KNIME, we also give a brief introduction to the commercial Thermo Compound Discoverer application and show how an OpenMS workflow can be integrated as a community extension.
Learning goals:
- Overview on the workflow system KNIME and OpenMS
- Understanding and applying the concept of automated processing pipelines
- Construction of simple workflows for the analysis of metabolomics data
- Brief introduction to Compound Discoverer and OpenMS community nodes
Prerequisites:
Users should be acquainted with mass spectrometry terms and data.
Keywords:
workflows, mass spectrometry, KNIME, OpenMS, automated analysis
Tools:
KNIME, OpenMS, Compound Discoverer
Contact:
If you want to take only part in the de.NBI teaching event Workflow based metabolomics, please contact:
Timo Sachsenberg,
If you want to register for the full, two day Metabolomics in Biomedical Research workshop (including the de.NBI teaching event: Workflow based metabolomics):
Registration link: https://docs.google.com/forms/d/1Bgh3-8zCAglNM19Np1kdYbRRnIzN7FNkw28B_vscC7c/viewform?c=0&w=1