Commissioned Services of ELIXIR Germany
ELIXIR's Commissioned Services are technical projects that guide future service development, drive standards adoption and connect ELIXIR Nodes. The following table provides information about Commissioned Services with German contributions.
| Commissioned Services | |||||
|---|---|---|---|---|---|
| Name of Study | Project name | Principal Investigator | Institutes | Nodes involved | Duration |
| 23-ELEAD | B4W - ELIXIR LEadership And Diversity mentoring programme | Irena Maus, Nils-Christian Lübke | Forschungszentrum Jülich | BE, ES, PT, CZ, NO, IT | June 2023 - May 2025 |
| 23-ML | A framework to standardize Machine Learning in Life Sciences | Nils Hoffmann | Forschungszentrum Jülich | GR, IT, UK, FR, IE, EE, BE, SE, EMBL-EBI, LU, DK, ES | January 2023 - December 2024 |
| 23-SYBEL | Systems Biology for ELIXIR | Ulrike Wittig | Heidelberg Institute for Theoretical Studies (HITS) | NL, SI, SE, UK, PT, LU, CZ, EMBL-EBI, GR, NO | January 2023 - December 2024 |
| 23-SCONE | Single-Cell Omics Network for ELIXIR | Naveed Ishaque | Charité Berlin | FI, SE, IT, CH, EMBL-EBI, SI, NL, UK, BE, GR, PT, IT, IL, NO, ES, FR, CZ, LU | January 2023 - December 2024 |
| 22-TP4 | Training Capacity Building | Bérénice Batut, Renato Alves | University of Freiburg, EMBL Heidelberg | CH, EMBL-EBI, GR, IT, NL, SE, SI, PT, UK | January 2022 - December 2023 |
| 22-TP2 | Gap analysis, training materials development and training delivery | Daniel Wibberg, Bérénice Batut | Bielefeld University, University of Freiburg | BE, CH, EMBL-EBI, FI, GR, IE, IT, NL, PT, SE, SI, SP, UK | January 2022 - December 2023 |
| 22-RDservices | ELIXIR Rare Disease Community services and international collaborations | Sven Olaf Twardziok, Naveed Ishaque | Charité Berlin | BE, CH, FR, GR, IT, LU, NL, SI, ES, UK | January 2022 - December 2023 |
| 22-FHD | The Federated EGA framework: supporting sensitive data management across the ELIXIR Nodes | Jan Korbel | EMBL Heidelberg | BE, CH, CZ, EMBL-EBI, ES, FI, GR, HU, IT, LU, NL, NO, PT, SE, SI, SP; UK | January 2022 - December 2023 |
| 22-ECP3 | Container Orchestration | Alexander Sczyrba | Bielefeld University | CH, CZ, EMBL-EBI, FI, GR, IT, NL | January 2022 - December 2023 |
| 22-ECP2 | ELIXIR Hybrid Cloud | Alexander Sczyrba, Jan Krüger, Nils Hoffmann, Alexander Goesmann, Marius Dieckmann | Bielefeld University, Justus-Liebig University Gießen | CZ, EMBL-EBI, IT, NL, UK | January 2022 - December 2023 |
| 22-ETP4 | Software Best Practices | Björn Grüning | University of Freiburg | GR, IT, NL, NO, SP, SE, SP | January 2022 - December 2023 |
| 22-ETP3 | The bio.tools registry and the EDAM ontology | Björn Grüning | University of Freiburg | CZ, DK, ES, FR, NL, NO, SP | January 2022 - December 2023 |
| 22-ETP1 | Packaging, containerisation & deployment | Björn Grüning | University of Freiburg | BE, EMBL-EBI, FR, GR, NO, IT, UK | January 2022 - December 2023 |
| 22-APICURON | APICURON integration with curation databases | Ulrike Wittig, Maja Rey | Heidelberg Institute for Theoretical Studies (HITS) | EMBL-EBI, IT, UK | January 2022 - December 2023 |
| 2021-containerservices | Making container services integratable, sustainable and widely adopted | Björn Grüning, Bérénice Batut, Beatriz Serrano-Solano, Sven Twardziok | University of Freiburg, Charité Berlin | BE, CH, CZ, EBI, ES, IT, FI, FR, GR, NL, UK | June 2021 - May 2023 |
| 2021-plants | Increasing Plant data findability and reuse beyond ELIXIR | Uwe Scholz, Sebastian Beier, Matthias Lange, Heidrun Gundlach, Björn Usadel | Leibniz Institute for Plant Genetics and Cultured Plant Research (IPK) Gatersleben; Helmholtz Center Munich, Forschungszentrum Jülich | FR, BE, EBI, GR, IT, NL, PT, SL, UK | June 2019 - May 2021 |
| 2021-Galaxy | Strengthen Data Management in Galaxy | Björn Grüning, Beatriz Serrano-Solano | University of Freiburg | BE, CH, CZ, ES, FR, IL, IT, NL, NO, SL, UK | June 2021 - May 2023 |
| 2021-IDPTools | Tools Platform Ecosystem | Michael Turewicz, Björn Grüning | Ruhr University Bochum, University of Freiburg | IT, BE, HU, ES, GR, CY | June 2021 - May 2023 |
| 2021-Proteomics | Increasing the translational value of public proteomics datasets: Automatic metadata-driven reanalysis in cloud infrastructures | Michael Turewicz, Julian Uszkoreit, Oliver Kohlbacher, Timo Sachsenberg | Ruhr University Bochum, University of Tübingen | BE, CZ, DK, EMBL-EBI, FI, FR, HU, IT, NL, SE | June 2021 - May 2023 |
| 2021-ToolsEcosystem | Tools Platform Ecosystem | Björn Grüning | University of Freiburg | FR, NO, DK, ES, EMBL-EBI, UK, BE, ES, IT | June 2021 - May 2023 |
| 2021-hCNVbundles | Reference hCNV datasets, use-case workflows and benchmarking | Björn Grüning | University of Freiburg | CH, FR, ES, UK | June 2021 - May 2023 |
| 2021-hCNVexchange | Beacon and beyond — Implementation-driven standards and protocols for CNV discovery and data exchange | Björn Grüning | University of Freiburg | CH, FR, EMBL-EBI, ES, UK | June 2021 - May 2023 |
| 2021-Impact | Impact evaluation at Node-level - getting it done | Irena Maus | Bielefeld University | PT, NO, BE, IT, GR, NL, CH, UK, FR, CZ, FI, EBI, ES, IL | June 2021 - May 2023 |
| 2020-microbialbiotech | Microbial Biotechnology Community | Alexander Goesmann | Justus-Liebig University Giessen | NL, FR, UK, GR, FI, PT, SI, CH, EBI | June 2020 - May 2022 |
| 2019-Proteomics | Comparison, benchmarking and dissemination of proteomics data analysis pipelines | Martin Eisenacher, Oliver Kohlbacher | Ruhr University Bochum, University of Tübingen | DK, EBI, NL, ES, FR, SE, IT, CZ | June 2019 - May 2021 |
| 2019-plants | FONDUE- FAIR-ification of Plant Genotyping Data and its linking to Phenotyping using ELIXIR Platforms | Uwe Scholz, Heidrun Gundlach, Klaus Mayer | Leibniz Institute for Plant Genetics and Cultured Plant Research (IPK) Gatersleben, Helmholtz Center Munich | FR, BE, NL, EBI | June 2019 - May 2021 |
| 2019-Metabolomics | Standardizing the fluxomics workflows | Oliver Kohlbacher | University of Tübingen | GR, ES, NL, IT, FR, UK, EBI, FI, SE, EE, BE, CH, CZ | June 2019 - May 2021 |
| 2019-ETP1 | Packaging, containerisation & deployment | Björn Grüning | University of Freiburg | ES, EBI, BE, FR, IT, NO, DK | June 2019 - May 2021 |
| 2019-Galaxy | Expanding the Galaxy: meeting (the needs of) ELIXIR Communities | Björn Grüning | University of Freiburg | BE, EBI, FR, UK, NL, ES, PT | June 2019 - May 2021 |
| 2019-ECP3 | ELIXIR hybrid cloud | Alexander Sczyrba | Bielefeld University | CZ, EBI, ES, FI, IT, UK, NL, LU, DK, PT, NO | June 2019 - May 2021 |
| 2019-Containers | Deploying Reproducible Containers and Workflows Across Cloud Environments - Strategic Implementation Study | Alexander Goesmann, Alexander Sczyrba, Christian Lawerenz, Björn Grüning | Justus-Liebig University Giessen, Bielefeld University, Charité Berlin, University of Freiburg | EBI, ES, FI, FR, DK, BE, SE, IT, CZ, CH, UK, NL, SI, PT, NO, GR | June 2019 - May 2021 |
| 2018-Widening | Widening Node participation in Implementation Studies | Frank Oliver Glöckner, Alexander Goesmann, Alexander Sczyrba | Justus-Liebig University Giessen, Jacobs University Bremen, Bielefeld University | June 2018 - May 2019 | |
| 2018-Proteomics | Crowd-sourcing the annotation of public proteomics datasets to improve data reusability | Martin Eisenacher, Oliver Kohlbacher | Ruhr University Bochum, University of Tübingen | BE, CH, SE, NL, ES, NO, DK, FR, EBI | June 2018 - May 2020 |
| 2018-Proteome | Extending open proteomics data analysis pipelines in the cloud: Additional tools and focus on scalability, supporting the dramatic growth of public proteomics data | Oliver Kohlbacher | University of Tübingen | BE, DE, ES, FR, EBI | August 2018 - July 2019 |
| 2018-Metabolomics | ELIXIR Implementation Study on Metabolite Identification | Steffen Neumann, Christoph Steinbeck | Leibniz Institute of Plant Biochemistry, Halle, Saale, Cheminformatics and Computational Metabolomics, Friedrich-Schiller University, Jena | NL, EBI, FR, ES, GR, SE, IT, CH, BE, EE, UK | June 2018 - July 2019 |
| 2018-Galaxy | Galaxy Community Implementation Study | Björn Grüning | University of Freiburg | BE, FR, NO, IT, CH, NL, ES, UK, CZ, SI | September 2018- August 2020 |
| 2018-Clearinghouse | Establishment of an ELIXIR Contextual Data Clearinghouse | Frank Oliver Glöckner | Jacobs University Bremen | NO, EBI, IT | June 2018- May 2020 |
| 2018-Biocontainers | Development of Architecture for Software Containers at ELIXIR and its use by EXCELERATE use-case communities | Björn Grüning | University of Freiburg | EBI, ES, BE, FR, DK, FR, IT | January 2018- June 2019 |
| 2017-Proteome | Mining the Proteome: Enabling Automated Processing and Analysis of Large-Scale Proteomics Data | Martin Eisenacher, Oliver Kohlbacher | Ruhr University Bochum, University of Tübingen | EBI | January 2017- June 2018 |
| 2017-Integration | Integration of ELIXIR Germany into ELIXIR activities | Alfred Pühler; Andreas Tauch, Oliver Kohlbacher, Rolf Backofen,Steffen Neumann, Uwe Scholz, Frank Oliver Glöckner | Bielefeld University, University of Tübingen,Leibniz Institute of Plant Biochemistry, Halle, Saale, Leibniz Institute for Plant Genetics and Cultured Plant Research, Gatersleben, Jacobs University Bremen | October 2017 - March 2019 | |
| 2017-Datamovement | ELIXIR Proof of concept study on the availability of big datasets on remote compute infrastructure | Alexander Sczyrba | Bielefeld University | SE, CZ, EBI, FI | October 2017 - March 2018 |