Computational Genomics: Bisulfite-seq analysis and data integration

Educators:
Altuna Akalin, Vedran Franke, Simon Andrews, Vedran Franke, Felix Krueger (RBC)

Date:
23-25 May 2018

Location:
MDC-Berlin

Contents:
1) Bisulfite-seq background, alignment and quality check using Bismark, SeqMonk and FastQC
2) Genomics data integration and visualisation using various Bioconductor packages along with genomation package
3) Methylome segmentation and differential methylation analysis using various Bioconductor packages along with methylKit package

Learning goals:
Learn how to process and analyze BS-seq data and integrate the results with other omics data sets and functional annotation.

Prerequisites:
- Experience with R (know how to read/write data, being able to make basic plots)
- Experience with unix terminal (knowing how to run commands on the terminal)

Keywords:
BS-seq, multi-omics, genomics

Tools:
Bismark, methyKit, GenomicRanges, Genomation

Contact:
Altuna Akalin, This email address is being protected from spambots. You need JavaScript enabled to view it.

apply here http://compgen.mdc-berlin.de