RBC Freiburg, Freiburg Galaxy Team
Wednesday June 28, 2017 12:30 - 15:00
This workshop is part of GCC conference in Montpellier, France (https://gcc2017.sched.com/)
After metagenomic data generation, you need to extract useful information such as the taxonomic composition of your samples or the metabolics functions made by the studied environment sample. Several tools have recently been integrated into Galaxy for metagenomic data analysis: Mothur, QIIME, MetaPhlAN, HUMAnN, FROGS,....
- Extraction of the OTUs using QIIME/Mothur
- Reconstruction of the taxonomic composition of a sample without OTUs using MetaPhlAn
- Find the metabolic functions realized in an environment using HUMAnN
Galaxy 101 or equivalent experience. Ideally participants will already be familiar with the concepts behind metagenomics (e.g., OTU). A wi-fi enabled laptop with a modern web browser. Google Chrome, Firefox and Safari will work best.
Galaxy, Mothur, QIIME, MetaPhlAN, HUMAnN, FROGS
Further information: https://gcc2017.sched.com/ https://gcc2017.sched.com/event/9n0O/how-to-analyze-metagenomic-and-amplicon-data-in-galaxy