Educators:
Peter Belmann1, David Weinholz1, Viktor Rudko1, Qiqi Mok1 (BiGi)
- IBG-5: Computational Metagenomics, Institute of Bio- and Geosciences (IBG), Research Center Jülich GmbH, Germany
Date:
22 Sep. 2025 from 9.00 to 12.00.
Location:
Heinrich Heine University (HHU) - Medical Faculty
Lecture Hall P.A.L.M.E. - Building 16.38
Moorenstraße 5
40225 Düsseldorf
Contents:
SimpleVM is a self-service platform within the OpenStack-based de.NBI Cloud, designed to simplify access to computational resources for life sciences research. It offers a variety of computational options, including basic data processing, GPU-accelerated machine learning, and cluster computing, all secured by an intrusion prevention system (IPS). SimpleVM also provides pre-configured Virtual Research Environments (VREs) accessible via web browsers or SSH, encompassing integrated development environments (IDEs) and data notebooks.
In this workshop, participants will delve into a metagenomics use case, where they will learn how to scale their analysis using SimpleVM. The workshop is designed to provide both theoretical knowledge and hands-on experience with cloud computing and the advanced features of SimpleVM. Participants will use VREs, SimpleVM Cluster and S3 to search for a genome of interest in the metagenome SRA mirror of the de.NBI Cloud site Bielefeld.
This workshop is tailored for researchers and educators seeking to optimize their computational tasks. Whether you're a seasoned professional or just starting out, SimpleVM's intuitive platform and robust features will empower you to achieve more in less time.
Learning goals:
- Gain hands-on experience with cloud computing and SimpleVM features.
- Learn how to scale a specific metagenomics use case with SimpleVM.
Prerequisites:
The only requirement is a basic knowledge of the Linux command line and a de.NBI Cloud account (
Keywords:
Cloud Computing, SimpleVM, Metagenomics, Virtual Research Environments
Tools:
SimpleVM
Contact: