Naveed Ishaque, Sven Twardziok, Pavlo Lutsik, Mei-Ju Chen, Clarissa Feuerstein (HD-HuB), Michael R. Crusoe, Celia van Gelder, Fotis E. Psomopoulos, Johannes Köster, Salvador Capella-Gutierrez, Laura Portell, Asier Gonzalez, Paolo Di Tommaso, Evan Floden, Luca Cozzuto, Gisela Gabernet, Friederike Hanssen

29.11. - 01.12.2021 (9:30 - 15:00)

Online via Zoom


Reproducibility is a cornerstone of good scientific practice. Thanks to funding provided by ELIXIR Training Platform Task 2, we have brought together the biggest names in bioinformatics workflow management for a 3 day practical workshop. We have presentations from the development teams of CWL, snakemake, next-flow, nf-core and more. If you want to learn more about the workflow management concepts that will be addressed in this workshop, check out these articles:

- Workflow systems turn raw data into scientific knowledge
- Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language
- Sustainable data analysis with Snakemake
- Nextflow enables reproducible computational workflows
- The nf-core framework for community-curated bioinformatics pipelines
- Lessons Learned: Recommendations for Establishing Critical Periodic Scientific Benchmarking

Learning goals:
Optimizied Working with different Workflow Engines.

PhD/postdoc-level bioinformaticians familiar with omics analysis and scripting in python/R. You should already be familiar with some data analysis workflows and ready to take your first steps in trying out a modern workflow management tool. The practical sessions will require use of your own laptop, HPC etc. Please note that you will be expected to set up software environments for the practical sessions before hand. Details on how to do this will be provided in due course.

Workflow, Nextflow, CWL, nf-core

Nextflow, CWL, nf-core

Naveed Ishaque, This email address is being protected from spambots. You need JavaScript enabled to view it.