Konstantin Riege (Jena), Steve Hoffmann (Jena), Steffen C. Lott (Freiburg), Wolfgang Hess (Freiburg), Andrea Bagnacani (Rostock), Markus Wolfien (Rostock), Olaf Wolkenhauer (Rostock), Loubna Youssar (Freiburg) (RBC / de.STAIR)
Albert-Ludwigs-Universität Freiburg, Schänzlestraße 1, 79104 Freiburg im Breisgau
In this training course, we introduce the Galaxy framework (https://usegalaxy.eu) for biomedical data analyses, and showcase its tools for data handling and preprocessing, differential gene expression analysis, bisulfite sequencing analysis, and Oxford Nanopore data exploration and usage. Lectures will be provided on the topics of RNA and Bisulfite sequencing, Epigenetics, and basic statistics, and followed by hands-on sessions. Finally, we showcase a Galaxy Docker installation for customized workflow analysis.
- Know your data, and the implications of data preprocessing and quality control
- Performing differential gene expression analysis using Galaxy
- Performing differential methylation analysis using Galaxy
- Handling and analyze Oxford Nanopore sequencing data
This workshop is intended for MSc/PhD students, postdocs, and researchers with a background in Life Science research. During registration, please hand over a poster about a research topic of your choosing. Posters will be presented during our poster session, which you can use to exchange experiences with other participants.
Galaxy, Workflow development, Differential gene expressionanalysis, differential methylation analysis, Epigenetics, Oxford Nanopore
Galaxy (https://usegalaxy.eu), Galaxy Training material (https://galaxyproject.github.io/training-material/)