Heidelberg

 

Educators:
Supriya Khedkar, Toby Hodges (HD-HuB)

Date:
18/03/2020
09:30 - 16:00

Location:
EMBL Heidelberg; Room 202

Contents:
Do you often work with lots of data files on the computer, are you often trying to spot particular files or lines of text in them that are important for you?

If so, then using regular expressions could save you a lot of time and frustration!

Regular expressions (regex/REs) are a language designed to describe patterns of characters that you want to match in a body of text. For example, if you want to extract every Ensembl Gene ID in a GFF file, find tandem repeats in a large set of sequences, or extract every email address in a large document, regular expressions are the perfect tool. Regular expressions are incorporated into a wide range of software and programming languages, and the workshop will include examples of their use on the UNIX command line and in R and Python.

Learning goals:
This workshop will provide an introduction to REs and cover some of the simple but powerful ways that these can be used to find patterns in large volumes of text data. The workshop will be interactive and driven by examples to demonstrate how you might use regular expressions in your work.

Prerequisites:
Participants are required to bring their own laptop to the workshop, with a text editor suitable for programming (e.g. Atom, Sublime Text, VSCode, Notepad++) installed.

Keywords:
UNIX command line, R, Python

Tools:
UNIX command line, R, Python

Contact and Registration:
https://bio-it.embl.de/events/introduction-to-regular-expressions-2/

Scientific and program questions: This email address is being protected from spambots. You need JavaScript enabled to view it.