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Services

The de.NBI Service Platform

Tools for Human Data

Title
ACEseq - method to detect somatic copy number variations
Alfred - NGS alignment quality control
BAND - Bioimage ANalysis Desktop
bashbone: NGS bash library
BiocWorkflowTools - bioconductor authoring tool
Bioinformatical consulting and analysis of proteomics data
biomaRt - R interface to BioMart services
BIONDA - database for biomarker-disease relationships
BiQ Analyzer - Processing and primary analysis of data obtained in clonal bisulfite sequencing experiments
BiQ Analyzer HiMod - Processing and primary analysis of data obtained in standard targeted bisulfite sequencing experiments
BiQ Analyzer HT - Processing and primary analysis of data obtained in high-throughput targeted bisulfite sequencing experiments
BRENDA - Information system on all aspects of enzymes
BUTLER - Framework for the cloud orchestration of genomics workflows
CalibraCurve - automated batch-mode determination of dynamic linear ranges and quantification limits
circlize - visualization of huge amounts of information
CWLab - simplified deployment of the Common Workflow Language using a GUI
Data standardisation and conversion service in Proteomics
DecompPipeline - A preprocessing pipeline for preparing DNA methylation data for MeDeCom
DELLY - workflow for the discovery of germline and somatic structural variants
DESeq2 - R/Bioconductor package for differential gene expression analysis

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  • Services by Organism
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The de.NBI Service Platform

The de.NBI services include among others the analysis of high-throughput data in genomics, transcriptomics and proteomics, bioinformatics and statistical support of research projects, the development of algorithms and access to computational space.

If you need further information on a tool, pipeline or database, consulting, or give feedback to our services, please contact us!

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The German Network for Bioinformatics Infrastructure – de.NBI is a national infrastructure supported by the Federal Ministry of Education and Research.

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