Tools for Human Data

ACEseq - method to detect somatic copy number variations
Alfred - NGS alignment quality control
BiocWorkflowTools - bioconductor authoring tool
Bioinformatical consulting and analysis of proteomics data
biomaRt - R interface to BioMart services
BiQ Analyzer - Processing and primary analysis of data obtained in clonal bisulfite sequencing experiments
BiQ Analyzer HiMod - Processing and primary analysis of data obtained in standard targeted bisulfite sequencing experiments
BiQ Analyzer HT - Processing and primary analysis of data obtained in high-throughput targeted bisulfite sequencing experiments
BRENDA - Information system on all aspects of enzymes
BUTLER - Framework for the cloud orchestration of genomics workflows
Conveyor - workflow engine
CrossPlatformCommander - multi-OMICS workflows
Data standardisation and conversion service in Proteomics
DeepBlue Epigenomic Data Server - data access hub for large collections of epigenomic data
DELLY - workflow for the discovery of germline and somatic structural variants
DESeq2 - R/Bioconductor package for differential gene expression analysis
DEXSeq - analysis of alternative exon usage
E-CRISP - Design of CRISPR constructs
EBImage & RBioFormats - R/Bioconductor packages that provide general purpose functionality for the reading, writing, processing and analysis of images
eggNOG - database of nested orthologous gene groups (NOGs)