Tools for Plant Data

BAND - Bioimage ANalysis Desktop
bashbone: NGS bash library
BIIGLE - Image and Video Annotation
Bioinformatical consulting and analysis of proteomics data
BRENDA - Information system on all aspects of enzymes
circlize - visualization of huge amounts of information
Crop Analysis Tools Suite (CATS)
CWLab - simplified deployment of the Common Workflow Language using a GUI
Data standardisation and conversion service in Proteomics
DESeq2 - R/Bioconductor package for differential gene expression analysis
DEXSeq - analysis of alternative exon usage
DIEGO: Differential splicing
E-CRISP - Design of CRISPR constructs
e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
EBImage & RBioFormats - R/Bioconductor packages that provide general purpose functionality for the reading, writing, processing and analysis of images
EnrichedHeatmaps - visualize enrichment of genomic signals on specific target regions
Epiphany - Bayesion protein inference
EURISCO - A search catalogue providing information about ex situ plant collections maintained in Europe
FlashDeconv - Top-Down Proteomics
Galaxy Workflow Generator