Tools for Microbial Data

ASA³P - assembly, annotation and higher-level analysis pipeline
BacDive - A tool for organism-linked information covering the multifarious aspects of bacterial biodiversity
Bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
BAND - Bioimage ANalysis Desktop
bashbone: NGS bash library
BiBiServ Tools
BIIGLE - Image and Video Annotation
Bioinformatical consulting and analysis of proteomics data
BRENDA - Information system on all aspects of enzymes
circlize - visualization of huge amounts of information
CWLab - simplified deployment of the Common Workflow Language using a GUI
Data standardisation and conversion service in Proteomics
DESeq2 - R/Bioconductor package for differential gene expression analysis
DEXSeq - analysis of alternative exon usage
DIEGO: Differential splicing
EBImage & RBioFormats - R/Bioconductor packages that provide general purpose functionality for the reading, writing, processing and analysis of images
ECF Hub - Extracytoplasmic function sigma factors classification
EDGAR - comparative genomics platform
eggNOG - database of nested orthologous gene groups (NOGs)
EMGB - CWL-based workflow for metagenomics analyses