Tools for Human Data

PROGENy - infer pathway activity from gene expression
ProteomicsLFQ - Large scale analysis workflow for label free analysis
PUBLISSO - open access publishing platform for research articles
quantMS - OpenMS in the quantMS workflow
rGREAT - Automatic Genomic Regions Enrichment of Annotations Tool (GREAT)
rhdf5 / Rhdf5lib - an interface between HDF5 and R
rippchen: Differential analyses pipelines
RNA-seq end-to-end workflow
RnBeads - R package for comprehensive analysis of DNA methylation data
Roddy - a framework for large scale NGS processing
SANS - Tool for phylogenetic reconstruction
segemehl: Short read mapping
SemLookP - metadata annotation & data search in the area of translational medicine
shournal: Shell monitoring
SIAMCAT - modular framework for the statistical inference of associations between microbial communities and host phenotypes
SIDER - resource that contains information on marketed medicines and their recorded adverse drug reactions
slalom - scalable modelling framework for single-cell RNA-seq data
SMART - resource providing simple identification and extensive annotation of protein domains via sequence homology searches
SNV calling pipeline
Statistical consulting and analysis of proteomics data

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