Tools for Microbial Data

rippchen: Differential analyses pipelines
SANS - Tool for phylogenetic reconstruction
segemehl: Short read mapping
shournal: Shell monitoring
SIAMCAT - modular framework for the statistical inference of associations between microbial communities and host phenotypes
SILVA - A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.
SILVAngs - A data analysis service for ribosomal RNA gene (rDNA) amplicon reads from high-throughput sequencing (NGS) approaches
SMART - resource providing simple identification and extensive annotation of protein domains via sequence homology searches
Statistical consulting and analysis of proteomics data
STITCH - Resource to explore known and predicted interactions of chemicals and proteins
STRING - Search Tool for the Retrieval of Interacting Genes/Proteins
Trimmomatic - NGS Read Trimmer
TYGS - the Type (Strain) Genome Server

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