Single cell RNA-seq processing and imputation tutorial

Educators:
Vedran Franke, Jonathan Ronen (RBC)

Date:
20 Feb 2018

Location:
MDC-Berlin

Contents:
1) Processing drop-seq data with PiGx pipelines available via GNU guix. The pipeline uses popular scRNA-seq tools via snakeMake interface.
2) Clustering, imputation and plotting using netSmooth and other R based tools

Learning goals:
Learn how to process and analyze scRNA-seq data

Prerequisites:
- BYOL (bring your own laptop)
- Experience with R (know how to read/write data, being able to make basic plots)
- Experience with unix terminal ( knowing how to run commands on the terminal)

Keywords:
RNA-seq, single-cell, scRNA-seq

Tools:
netSmooth, drop-seq-tools, scater

Contact:
Altuna Akalin, This email address is being protected from spambots. You need JavaScript enabled to view it.

apply here (the room capacity is limited, we might have to select applicants):
https://goo.gl/forms/oZhfxu23tL7YB0lM2