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Services

The de.NBI Service Platform

RNA Bioinformatics Center (RBC)

Title
bashbone: NGS bash library
Berlin RNA Toolbox
de.STAIR-Rostock - TRAPLINE: A tool for RNAseq data processing
de.STAIR-Rostock - TriplexRNA: A database of cooperating miRNAs and mutual targets
DIEGO: Differential splicing
European Galaxy Server - Transcription analysis
Freiburg RNA Toolbox
Freiburg tools for Transcriptomics
Galaxy Workflow Generator
Github repository: galaxytools
GLASSgo - finding sRNA homologs
haarz: Adaptive variant caller
Janggu - Genomic Data integration via deep learning
Leipzig – Vienna RNA Package and Toolbox - Various Webservices and Tools for Transcriptomics
MDC-Berlin: Ohler Lab provided Tools for Genomics and Transcriptomics
MDC-Berlin: Rajewsky Lab provides Tools and Services for Transcriptomics
methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing
metilene: Differential methylation
muvac: Variant calling pipeline
PiGx - Reproducible workflows for genomics

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    • de.NBI Systems Biology Service Center (de.NBI-SysBio)
    • German Crop BioGreenformatics Network (GCBN)
    • Heidelberg Center for Human Bioinformatics (HD-HuB)
    • RNA Bioinformatics Center (RBC)
    • Associated Partners
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The de.NBI Service Platform

The de.NBI services include among others the analysis of high-throughput data in genomics, transcriptomics and proteomics, bioinformatics and statistical support of research projects, the development of algorithms and access to computational space.

If you need further information on a tool, pipeline or database, consulting, or give feedback to our services, please contact us!

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