RNA Bioinformatics Center (RBC)

bashbone: NGS bash library
Bioinformatics Leipzig - Various Webservices and Tools for Transcriptomics
de.STAIR-Rostock - TRAPLINE: A tool for RNAseq data processing
de.STAIR-Rostock - TriplexRNA: A database of cooperating miRNAs and mutual targets
DIEGO: Differential splicing
Docker images: galaxy-stable, galaxy-rna-workbench
European Galaxy Server - Transcription analysis
Freiburg RNA Tools Webserver
Freiburg tools for Transcriptomics
Galaxy Workflow Generator
Github repository: galaxytools
GLASSgo - finding sRNA homologs
haarz: Adaptive variant caller
Janggu - Genomic Data integration via deep learning
MDC-Berlin: Ohler Lab provided Tools for Genomics and Transcriptomics
MDC-Berlin: Rajewsky Lab provides Tools and Services for Transcriptomics
methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing
metilene: Differential methylation
muvac: Variant calling pipeline
PiGx - Reproducible workflows for genomics