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Services

The de.NBI Service Platform

Bielefeld-Gießen Resource Center for Microbial Bioinformatics (BiGi)

Title
ASA³P - assembly, annotation and higher-level analysis pipeline
Bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
BiBiServ Tools
BIIGLE - Image and Video Annotation
ECF Hub - Extracytoplasmic function sigma factors classification
EDGAR - comparative genomics platform
EMGB - CWL-based workflow for metagenomics analyses
Fusion - a platform for integrative analysis of omics data
MeltDB - framework for the analysis of for raw GC- and LC-MS metabolome data sets
MetaProteomeAnalyzer - identification of taxonomic and functional relationships between identified proteins
MGX - analysis and interpretation of environmental community sequence data
PATCH - Collection of software solutions for pangenome analyses
PLAST - Pangenome Local Alignment Search Tool
Platon - detection of plasmid contigs within bacterial draft genomes
QuPE - framework for quantitative proteomics experiments
ReferenceSeeker - determination of closely related reference genomes
SANS - Tool for phylogenetic reconstruction
WASP - management, analysis and interpretation of scRNA-seq high-throughput data
  • Toolboxes
  • Services by Service Centers
    • Bielefeld-Gießen Resource Center for Microbial Bioinformatics (BiGi)
    • Bioinformatics for Proteomics (BioInfra.Prot)
    • Center for Biological Data (BioData)
    • Center for Integrative Bioinformatics (CIBI)
    • de.NBI Systems Biology Service Center (de.NBI-SysBio)
    • German Crop BioGreenformatics Network (GCBN)
    • Heidelberg Center for Human Bioinformatics (HD-HuB)
    • RNA Bioinformatics Center (RBC)
    • Associated Partners
  • Services by Categories
  • Services by Organism
  • Industrial Forum Services
  • bio.tools
  • Competence Areas
  • Guidelines for Service Selection
  • KPI Cheat Sheet

The de.NBI Service Platform

The de.NBI services include among others the analysis of high-throughput data in genomics, transcriptomics and proteomics, bioinformatics and statistical support of research projects, the development of algorithms and access to computational space.

If you need further information on a tool, pipeline or database, consulting, or give feedback to our services, please contact us!

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