Metaproteomics consulting: from study design to bioinformatic analysis
This consulting service supports researchers in planning and executing metaproteomics projects, covering the entire workflow from experimental design to bioinformatic analysis and interpretation. Support includes both wet-lab planning (e.g. sample handling, study design, metadata collection, common pitfalls) and computational analysis (e.g. database strategy, peptide/protein identification and quantification, quality control, statistics, and reporting). Consulting and analysis services are offered free of charge for scientific users.
Key benefits
End-to-end support for metaproteomics projects
Integration of experimental design and computational strategy
Expert guidance on database construction and search strategies
Quality control, troubleshooting, and reproducible analysis workflows
Support for statistical analysis, visualization, and interpretation
Free-of-charge consulting for scientific users
Applications
Study design and metadata planning for metaproteomics experiments
Selection and optimization of protein databases and search parameters
Peptide and protein identification and quantification workflows
Quality assessment and troubleshooting of LC-MS/MS data
Statistical analysis and data visualization
Support in preparing figures and methods text for publications
Intended use
This service is intended for researchers in microbiome research, proteomics, and systems biology who plan or conduct metaproteomics studies and require expert guidance throughout the workflow. It is particularly suited for scientific users who seek structured support in both experimental planning and bioinformatic data analysis.
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