Heidelberg Center for Human Bioinformatics (HD-HuB)

ACEseq - method to detect somatic copy number variations
Alfred - NGS alignment quality control
BiocWorkflowTools - bioconductor authoring tool
biomaRt - R interface to BioMart services
BiQ Analyzer - Processing and primary analysis of data obtained in clonal bisulfite sequencing experiments
BiQ Analyzer HiMod - Processing and primary analysis of data obtained in standard targeted bisulfite sequencing experiments
BiQ Analyzer HT - Processing and primary analysis of data obtained in high-throughput targeted bisulfite sequencing experiments
BUTLER - Framework for the cloud orchestration of genomics workflows
circlize - visualization of huge amounts of information
CWLab - simplified deployment of the Common Workflow Language using a GUI
DecompPipeline - A preprocessing pipeline for preparing DNA methylation data for MeDeCom
DELLY - workflow for the discovery of germline and somatic structural variants
DESeq2 - R/Bioconductor package for differential gene expression analysis
DEXSeq - analysis of alternative exon usage
Dorothea - human and mouse TF regulons
E-CRISP - Design of CRISPR constructs
EBImage & RBioFormats - R/Bioconductor packages that provide general purpose functionality for the reading, writing, processing and analysis of images
eggNOG - database of nested orthologous gene groups (NOGs)
EnrichedHeatmaps - visualize enrichment of genomic signals on specific target regions
Enterotyping - determine enterotypes in new studies