Educators:
Sebastian Jaenicke, Sebastian Jünemann (BiGi), Dirk Winkelhardt, Maike Carina Weber (BioInfra.Prot), Helena Schnitzer, Daniel Wibberg, Nils Hoffmann (CAU), Michael Crusoe (CIBI), Sebastian Beier (GCBN), Sebastian Schaaf (RBC), Leyla Jael Castro (ZB MED)
Keynotes:
Nick Juty – The University of Manchester, ELIXIR UK, Topic: Bioschemas
Björn Grüning – Freiburg University, ELIXIR DE, Topic: Galaxy
Veit Schwämmle - University of Southern Denmark, ELIXIR-DK, Topic: Proteomics & Software Development
Date:
25-09-2023 to 29-09-2023
Location:
Center for Biotechnology - Bielefeld University
Room G2-104
Universitätsstraße 27
33615 Bielefeld
Contents:
The life sciences are an important player in the age of Big Data. Modern high-throughput -omics technologies produce large quantities of high-dimensional data. Besides new challenges for analysing and visualising this amount of research data, also the management and sharing has become an important point in the daily research process. The main objective of the 2023 de.NBI Summer School is to give an overview of the possibilities to process, analyse, share and integrate data by using different open source platforms.
Program
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Monday, 25-09-2023 |
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11:00 – 12:00 |
Arrival & Registration |
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12:00 – 13:00 |
Introduction to de.NBI & ELIXIR Germany & de.NBI Cloud |
Daniel Wibberg & Nils Hoffmann |
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13:00 –14:00 |
Lunch Break |
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14:00 – 17:00 |
de.NBI Cloud in a Nutshell - UNIX & SimpleVM |
Nils Hoffmann & Sebastian Jünemann |
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17:00 – 20:00 |
Barbecue |
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Tuesday, 26-09-2023 |
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09:00 – 10:30 |
Keynote Topic: Workflows and Reproducibility |
Björn Grüning |
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10:30 – 11:00 |
Coffee Break |
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11:00 – 13:00 |
Introduction to Galaxy Europe – Session I |
Sebastian Schaaf |
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13:00 – 14:00 |
Lunch Break |
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14:00 – 16:00 |
Introduction to Galaxy Europe – Session II / Common Workflow Language - Session I |
Sebastian Schaaf Michael R. Crusoe |
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16:00 – 16:30 |
Coffee Break |
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16:30 – 18:00 |
Common Workflow Language - Session II |
Michael R. Crusoe |
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Evening at free disposal |
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Wednesday, 27-09-2023 |
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09:00 – 10:00 |
Keynote Topic: Bioschemas |
Nick Juty |
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10:00 – 10:30 |
Bioschemas Session I |
Nick Juty & Leyla Jael Castro |
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10:30 – 11:00 |
Coffee Break |
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11:00 – 13:00 |
Bioschemas and FAIR - Session II |
Nick Juty & Leyla Jael Castro |
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13:00 – 14:00 |
Lunch Break |
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14:00 – 16:00 |
Bioschemas and FAIR - Session III |
Nick Juty & Leyla Jael Castro |
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16:00 – 18:00 |
Coffee Break & Flash Talks & Poster session |
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Evening at free disposal |
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Thursday, 28-09-2023 |
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09:00 – 10:30 |
Keynote Topic: Proteomics: From single tools to workflows and deep learning |
Veit Schwämmle |
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10:30 – 11:00 |
Coffee Break |
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11:00 – 13:00 |
Introduction to Python – Session I |
Dirk Winkelhardt & Maike Carina Weber |
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13:00 – 14:00 |
Lunch Break |
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14:00 – 16:00 |
Introduction to Python – Session II |
Dirk Winkelhardt & Maike Carina Weber |
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16:00 – 16:30 |
Coffee Break |
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16:30 – 18:00 |
Merge Python's convenience with Rust's speed |
Dirk Winkelhardt & Maike Carina Weber |
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18:30 – 21:00 |
Dinner at "Wirtshaus1802 im Bültmannshof" |
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Friday, 29-09-2023 |
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09:00 – 10:30 |
Structural and functional gene prediction in plants |
Sebastian Beier |
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10:30 – 11:00 |
Coffee Break |
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11:00 – 13:00 |
The MGX framework for microbial community analysis |
Sebastian Jaenicke |
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13:00 – 14:00 |
Lunch Break |
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14:00 – 15:00 |
Summary & Goodbye |
Daniel Wibberg | |
Tools:
Python, Rust, Bioschemas, ORCID, de.NBI cloud, MGX, Galaxy, CWL
Contact:
Application:
https://www.surveymonkey.de/r/9H7Y6BS
Deadlines:
First Announcement: 17 May
Application Deadline: 30 June
Notification of Acceptance: 14 July