Alexander Goesmann, Jochen Blom, Oliver Rupp, Lukas Jelonek, Rolf Hilker (BiGi)

November 03 – November 04, 2015

Justus-Liebig-University Gießen
Room 0024a
Heinrich-Buff-Ring 58
35392 Gießen

This course will teach participants how to use the CLC Genomics Workbench for genome analysis. The CLC Genomics Workbench is a commercial software for the analysis and visualization of next generation sequencing data. Professional trainers from CLC bio will present the Genomics Workbench with a focus on de-novo genome assembly, short-read mapping, and RNA-Seq experiment. The course is split into two parts:
1.) Basic training on Genomics Workbench: Data preparation, QC evaluation, read mapping, variant detection, de novo sequencing, genome finishing, de novo assembly
2.) Advanced training on Genomics Workbench: Set-up automatic pipeline, RNA-Seq analysis, Chip-Seq and methylation analysis, OTU Clustering and Analysis of Microbial Communities

Learning goals:
Participants will be instructed in the genomics workflow and gain understanding of the possibilities and limitations of genome sequencing and sequence analysis.

The course is aimed at PhD students, postdoctoral fellows or other scientists with a solid background in bioinformatics and molecular biology.

Genomics, Annotation, RNA-Seq, Short-read mapping

CLC Genomics Workbench

Prof. Alexander Goesmann
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