Educators:
Valentin Schneier-Lunitz, Martin Braun (HD-HuB)
Date:
31.07.2023 1pm-5pm
Location:
Online
Content:
In this workshop, we are going to use the open-source software WESkit that implements the Workflow Execution Service (WES) API defined by the Global Alliance for Genomics and Health (GA4GH). WESkit allows the researchers to execute Nextflow and Snakemake workflows locally or remote (HPC). It also provides extensive logging capabilities, and a user management system, and supports high data throughput, stability, and security.
The software can be found at https://gitlab.com/one-touch-pipeline/weskit
Participants will be encouraged to set up their own WESkit instance and
use it to submit both Nextflow and Snakemake workflows.
Prerequisites
Browser
Keywords:
Cloud Computing, Linux, EOSC Life
Tools:
Bash, Conda /mamba, Docker
Contact:
Registration:
https://forms.office.com/e/L6Ah5aaBsK