Bork Microbiome Toolbox
Bork Microbiome Toolbox – Resources for Microbiome and Functional Genomics Analysis
The Bork Microbiome Toolbox brings together web-based resources for microbiome research, comparative genomics, functional annotation, pathway exploration, and biological data visualization. The tools support researchers in analysing microbial communities, interpreting functional potential, exploring protein and genome relationships, and visualizing complex biological datasets in accessible, interactive formats.
Key benefits
Collection of established resources for microbiome and comparative genomics research
Supports functional annotation, pathway exploration, and phylogenetic visualization
Enables analysis of microbial communities, genomes, proteins, and biological traits
Provides interactive web-based access for users with different levels of bioinformatics expertise
Useful for both exploratory analysis and integration into microbiome interpretation workflows
Applications
Functional annotation of genes and proteins
Exploration of microbial genomes, traits, and community patterns
Visualization of phylogenetic trees and biological networks
Interpretation of metagenomic and microbiome datasets
Pathway-level and trait-level analysis of microbial functions
Included tools
eggNOG – orthology-based functional annotation and evolutionary analysis of genes and proteins
iPATH – interactive visualization and exploration of biological pathways
iTOL – display, annotation, and visualization of phylogenetic trees
Enterotypes – classification and exploration of human gut microbiome enterotypes
proGenomes – microbial genome resource for comparative and functional genomics
Spire, Metalog, and Metatraits – resources supporting microbiome data interpretation, metadata exploration, and trait-level analysis
Intended use
The Bork Microbiome Toolbox is intended for microbiome researchers, bioinformaticians, microbial ecologists, systems biologists, and life science researchers who need accessible resources for interpreting microbial sequence, genome, pathway, phylogenetic, or trait data. It is particularly suited for users working with metagenomic datasets, microbial genome collections, functional annotations, and microbiome-related comparative analyses.
If you use a tool of the Toolbox please take the time to answer our short survey to help us improve our services: https://www.surveymonkey.de/r/denbi-service?sc=hd-hub&tool=borkmicrobiometoolbox
Contact:
Website