A collection of web resources and R packages for working with proteins, drug reactions, gene expression analysis, proteome profiling and assessing Oxford Nanopore Data. 

SMART http://smart.embl-heidelberg.de/
SIDER http://sideeffects.embl.de/
DeSeq2 https://bioconductor.org/packages/release/bioc/html/DESeq2.html
DeSeq: https://bioconductor.org/packages/release/bioc/html/DEXSeq.html

https://bioconductor.org/packages/3.10/bioc/html/DESeq.html

EBImage https://bioconductor.org/packages/release/bioc/html/EBImage.html