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bashbone: NGS bash library
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BiQ Analyzer - Processing and primary analysis of data obtained in clonal bisulfite sequencing experiments
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BiQ Analyzer HiMod - Processing and primary analysis of data obtained in standard targeted bisulfite sequencing experiments
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BiQ Analyzer HT - Processing and primary analysis of data obtained in high-throughput targeted bisulfite sequencing experiments
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DecompPipeline - A preprocessing pipeline for preparing DNA methylation data for MeDeCom
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DIEGO: Differential splicing
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e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
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FactorViz - A graphical user interface for interpretation of deconvolution results of MeDeCom
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Galaxy Workflow Generator
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haarz: Adaptive variant caller
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Janggu - Genomic Data integration via deep learning
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Magellan - display and analysis of next-generation sequencing data with a focus on COVID-19
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MeDeCom - decomposition of heterogeneous DNA methylomes
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methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing
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metilene: Differential methylation
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PiGx - Reproducible workflows for genomics
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rippchen: Differential analyses pipelines
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RnBeads - R package for comprehensive analysis of DNA methylation data
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segemehl: Short read mapping
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