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The de.NBI Service Platform

Epigenetics

Title
bashbone: NGS bash library
BiQ Analyzer - Processing and primary analysis of data obtained in clonal bisulfite sequencing experiments
BiQ Analyzer HiMod - Processing and primary analysis of data obtained in standard targeted bisulfite sequencing experiments
BiQ Analyzer HT - Processing and primary analysis of data obtained in high-throughput targeted bisulfite sequencing experiments
ChrAccR - R package for the comprehensive analysis of chromatin accessibility data
DecompPipeline - A preprocessing pipeline for preparing DNA methylation data for MeDeCom
DIEGO: Differential splicing
e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
FactorViz - A graphical user interface for interpretation of deconvolution results of MeDeCom
Galaxy Workflow Generator
haarz: Adaptive variant caller
Janggu - Genomic Data integration via deep learning
Magellan - display and analysis of next-generation sequencing data with a focus on COVID-19
MeDeCom - decomposition of heterogeneous DNA methylomes
Methview.qc - quality control plots from methylation array dataset
methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing
metilene: Differential methylation
PiGx - Reproducible workflows for genomics
rippchen: Differential analyses pipelines
RnBeads - R package for comprehensive analysis of DNA methylation data

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