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Services

The de.NBI Service Platform

Transcriptomics

Title
Berlin RNA Toolbox
BiBiServ Tools
BiocompR - a visualization framework for data comparison and exploration
Crop Analysis Tools Suite (CATS)
DESeq2 - R/Bioconductor package for differential gene expression analysis
DEXSeq - analysis of alternative exon usage
Dorothea - human and mouse TF regulons
e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
ECF Hub - Extracytoplasmic function sigma factors classification
Freiburg RNA Toolbox
Fusion - a platform for integrative analysis of omics data
GenomeRNAi - database for RNAi phenotype data
GLASSgo - finding sRNA homologs
Helixer – Deep Learning-Based Gene Prediction for Eukaryotic Genomes
IHW - Independent hypothesis weighting
iPath - visualization and analysis of cellular pathways
Janggu - Genomic Data integration via deep learning
Leipzig – Vienna RNA Package and Toolbox - Various Webservices and Tools for Transcriptomics
MapMan - Map Gene / Protein / Metabolite Data on biological Pathways
Mercator - annotate and classify plant protein and DNA sequences

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