Genomics

Title
Alfred - NGS alignment quality control
Aruna – Platform for FAIR Data Management and Data Sharing
BacDive - A tool for organism-linked information covering the multifarious aspects of bacterial biodiversity
BakRep – Large-Scale Web Repository for Bacterial Genomes & Metadata
Bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
BiBiServ Tools
BiocompR - a visualization framework for data comparison and exploration
biomaRt - R interface to BioMart services
BiQ Analyzer - Processing and primary analysis of data obtained in clonal bisulfite sequencing experiments
BiQ Analyzer HiMod - Processing and primary analysis of data obtained in standard targeted bisulfite sequencing experiments
BiQ Analyzer HT - Processing and primary analysis of data obtained in high-throughput targeted bisulfite sequencing experiments
CellNetAnalyzer - A toolbox for analyzing structure and function of metabolic, signaling, and regulatory networks
CellNetAnalyzer for python (CNApy) - an advanced graphical user interface for exploration and computational analysis of metabolic network models 
circlize - visualization of huge amounts of information
Crop Analysis Tools Suite (CATS)
Curare – Reproducible RNA-Seq Analysis for Bacterial Transcriptomics
DELLY - workflow for the discovery of germline and somatic structural variants
E-CRISP - Design of CRISPR constructs
e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
EDGAR - comparative genomics platform

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