Genomics

ACEseq - method to detect somatic copy number variations
Alfred - NGS alignment quality control
Animal genome assembly and annotation - A service for guidance and hands-on support for groups interested in conducting a de novo genome project
BacDive - A tool for organism-linked information covering the multifarious aspects of bacterial biodiversity
BiBiServ Tools
biomaRt - R interface to BioMart services
BiQ Analyzer - Processing and primary analysis of data obtained in clonal bisulfite sequencing experiments
BiQ Analyzer HiMod - Processing and primary analysis of data obtained in standard targeted bisulfite sequencing experiments
BiQ Analyzer HT - Processing and primary analysis of data obtained in high-throughput targeted bisulfite sequencing experiments
BUTLER - Framework for the cloud orchestration of genomics workflows
CellNetAnalyzer - A toolbox for analyzing structure and function of metabolic, signaling, and regulatory networks
circlize - visualization of huge amounts of information
Crop Analysis Tools Suite (CATS)
DELLY - workflow for the discovery of germline and somatic structural variants
E-CRISP - Design of CRISPR constructs
e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
ECF Hub - Extracytoplasmic function sigma factors classification
EDGAR - comparative genomics platform
eggNOG - database of nested orthologous gene groups (NOGs)
EnrichedHeatmaps - visualize enrichment of genomic signals on specific target regions