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APEER (Carl Zeiss Microscopy GmbH)
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BAND - Bioimage ANalysis Desktop
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BIIGLE - Image and Video Annotation
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e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
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EBImage & RBioFormats - R/Bioconductor packages that provide general purpose functionality for the reading, writing, processing and analysis of images
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Fiji - An image processing package
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Galaxy Image Analysis - Workflows and tools for analysis of microscopy image data and cellular phenotyping
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KNIME - Cellular phenotyping of microscope image data
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