CellNetAnalyzer - A toolbox for analyzing structure and function of metabolic, signaling, and regulatory networks
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circlize - visualization of huge amounts of information
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Cloud-based data analysis in metabolomics (PhenomeNal)
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e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
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Fusion - a platform for integrative analysis of omics data
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Goslin - Tool for lipid shorthand name parsing and normalization
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iPath - visualization and analysis of cellular pathways
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KNIME - A modern platform for data analytics
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LipidCreator - Computing precursor and fragment masses / formulas for lipids for targeted lipidomics
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LipidXplorer - Identification and quantification of lipids within MS measurements for shotgun lipidomics
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LUX Score - Tool for the comprehensive comparison of lipidomes of different origins
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MapMan - Map Gene / Protein / Metabolite Data on biological Pathways
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MassBank - repository of mass spectra of small chemical compounds
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Mechismo - impact predictions of genetic variants on biomolecular function
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MeltDB - framework for the analysis of for raw GC- and LC-MS metabolome data sets
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Metabolomics data management and deposition (MetaboLights)
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MetFrag - In silico fragmentation for computer assisted identification of metabolite mass spectra
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MOFA - versatile and statistically rigorous generalization of PCA to multi-omics data
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OpenMS - A C++ library for LC/MS data management and analyses
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PlabiPD - Functional annotation of plant genomes
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