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The de.NBI Service Platform

Metagenomics

Title
BiocompR - a visualization framework for data comparison and exploration
circlize - visualization of huge amounts of information
e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
eggNOG - database of nested orthologous gene groups (NOGs)
EMGB - CWL-based workflow for metagenomics analyses
Enterotyping - determine enterotypes in new studies
iPath - visualization and analysis of cellular pathways
iTOL - display and manipulation of phylogenetic trees
KNIME - A modern platform for data analytics
MGX - analysis and interpretation of environmental community sequence data
Microbiome Analysis Toolbox
mOTUs - quantification of known (sequenced) and unknown microorganisms at species-level resolution from shotgun sequencing data
NGLess - domain-specific language for next-generation sequencing data processing
PLAST - Pangenome Local Alignment Search Tool
proGenomes - consistent taxonomic and functional annotations for bacterial and archaeal genomes
Rightfield - A tool for adding ontology term selection to Excel spreadsheets
SANS - Tool for phylogenetic reconstruction
segemehl: Short read mapping
SIAMCAT - modular framework for the statistical inference of associations between microbial communities and host phenotypes
SILVA - A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.

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