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methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing
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Nanopore CeBiTec Best Pratice Workshop 2019
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NGLess - domain-specific language for next-generation sequencing data processing
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OTP - comprehensive framework for NGS project organization and processing
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PanCancer alignment workflow
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PiGx - Reproducible workflows for genomics
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PlabiPD - Functional annotation of plant genomes
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Plant Genome Annotation
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PlantsDB - Holds structured and interconnected genome and gene data for prominent plant species
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PLAST - Pangenome Local Alignment Search Tool
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Platon - detection of plasmid contigs within bacterial draft genomes
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PRECOG - predict GPCR-G-protein couplings
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proGenomes - consistent taxonomic and functional annotations for bacterial and archaeal genomes
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ReferenceSeeker - determination of closely related reference genomes
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rGREAT - Automatic Genomic Regions Enrichment of Annotations Tool (GREAT)
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Rightfield - A tool for adding ontology term selection to Excel spreadsheets
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Roddy - a framework for large scale NGS processing
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SANS - Tool for phylogenetic reconstruction
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segemehl: Short read mapping
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SeqAn - A C++ library for the analysis of sequences
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