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The de.NBI Service Platform

Genomics

methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing
Nanopore CeBiTec Best Pratice Workshop 2019
NGLess - domain-specific language for next-generation sequencing data processing
OTP - comprehensive framework for NGS project organization and processing
PanCancer alignment workflow
PiGx - Reproducible workflows for genomics
PlabiPD - Functional annotation of plant genomes
Plant Genome Annotation
PlantsDB - Holds structured and interconnected genome and gene data for prominent plant species
PLAST - Pangenome Local Alignment Search Tool
Platon - detection of plasmid contigs within bacterial draft genomes
PRECOG - predict GPCR-G-protein couplings
proGenomes - consistent taxonomic and functional annotations for bacterial and archaeal genomes
ReferenceSeeker - determination of closely related reference genomes
rGREAT - Automatic Genomic Regions Enrichment of Annotations Tool (GREAT)
Rightfield - A tool for adding ontology term selection to Excel spreadsheets
Roddy - a framework for large scale NGS processing
SANS - Tool for phylogenetic reconstruction
segemehl: Short read mapping
SeqAn - A C++ library for the analysis of sequences

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