Transcriptomics Enter Part of Title Filter Clear Title Helixer – Deep Learning-Based Gene Prediction for Eukaryotic Genomes IHW - Independent hypothesis weighting iPath - visualization and analysis of cellular pathways Janggu - Genomic Data integration via deep learning KNIME - A modern platform for data analytics Large-scale genome-wide association studies - A service for for planning (and execution) of genome-wide association studies (GWAS) Leipzig – Vienna RNA Package and Toolbox - Various Webservices and Tools for Transcriptomics MapMan - Map Gene / Protein / Metabolite Data on biological Pathways Mercator - annotate and classify plant protein and DNA sequences methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing MOFA – Multi-Omics Factor Analysis muvac: Variant calling pipeline MuVi - a multi-view latent variable model with domain-informed structured sparsity PiGx - Reproducible workflows for genomics PlabiPD - Functional annotation of plant genomes PlantsDB - Holds structured and interconnected genome and gene data for prominent plant species PROGENy - infer pathway activity from gene expression rippchen: Differential analyses pipelines RNA-seq end-to-end workflow segemehl: Short read mapping Page 2 of 3 1 2 3
