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Transcriptomics

Github repository: galaxytools
GLASSgo - finding sRNA homologs
haarz: Adaptive variant caller
IHW - Independent hypothesis weighting
iPath - visualization and analysis of cellular pathways
Janggu - Genomic Data integration via deep learning
KNIME - A modern platform for data analytics
Large-scale genome-wide association studies - A service for for planning (and execution) of genome-wide association studies (GWAS)
MapMan - Map Gene / Protein / Metabolite Data on biological Pathways
MDC-Berlin: Ohler Lab provided Tools for Genomics and Transcriptomics
MDC-Berlin: Rajewsky Lab provides Tools and Services for Transcriptomics
Mercator - annotate and classify plant protein and DNA sequences
methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing
MOFA - versatile and statistically rigorous generalization of PCA to multi-omics data
muvac: Variant calling pipeline
PiGx - Reproducible workflows for genomics
PlabiPD - Functional annotation of plant genomes
PlantsDB - Holds structured and interconnected genome and gene data for prominent plant species
PROGENy - infer pathway activity from gene expression
rippchen: Differential analyses pipelines

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