Tools for Human Data

Mechnetor - Mechanistic Networks Explorer
MeDeCom - decomposition of heterogeneous DNA methylomes
MetFrag - In silico fragmentation for computer assisted identification of metabolite mass spectra
Methview.qc - quality control plots from methylation array dataset
methylKit - R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing
metilene: Differential methylation
MHCquant - A Workflow for Identification and Quantification of HLA Ligands
MOFA - versatile and statistically rigorous generalization of PCA to multi-omics data
muvac: Variant calling pipeline
NGLess - domain-specific language for next-generation sequencing data processing
OmniPath - database of causal protein-protein interactions
OTP - comprehensive framework for NGS project organization and processing
PanCancer alignment workflow
PATCH - Collection of software solutions for pangenome analyses
PeptideShaker - Proteomics analysis suite for quality control, identification and quantification
PIA - toolbox for MS based protein inference and identification analysis
PiGx - Reproducible workflows for genomics
PLAST - Pangenome Local Alignment Search Tool
PRECOG - predict GPCR-G-protein couplings
proGenomes - consistent taxonomic and functional annotations for bacterial and archaeal genomes

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