Tools for Human Data

SMART - resource providing simple identification and extensive annotation of protein domains via sequence homology searches
SNV calling pipeline
specI - species identification tool using genomic sequences to delineate prokaryotic species
STAMPS - Simple Targeted Assays for Metabolomic Pathways and Signaling
Statistical consulting and analysis of proteomics data
STITCH - Resource to explore known and predicted interactions of chemicals and proteins
STRING - Search Tool for the Retrieval of Interacting Genes/Proteins
TPP - Analyzing thermal proteome profiling experiments
Trimmomatic - NGS Read Trimmer
Various NGS Pipelines - Quality assessment programms for NGS, variant calling pipelines, PanCancer pipelines
Workflows and recipes for typical analyses of human genome and multi-omic data
YAPSA - analysis of somatic signatures