Commissioned Services of ELIXIR Germany

ELIXIR's Commissioned Services are technical projects that guide future service development, drive standards adoption and connect ELIXIR Nodes. The following table provides information about Commissioned Services with German contributions.

Commissioned Services
Name of StudyProject namePrincipal InvestigatorInstitutesNodes involvedDuration
23-ELEAD B4W - ELIXIR LEadership And Diversity mentoring programme Irena Maus, Nils-Christian Lübke Forschungszentrum Jülich BE, ES, PT, CZ, NO, IT June 2023 - May 2025
23-ML A framework to standardize Machine Learning in Life Sciences Nils Hoffmann Forschungszentrum Jülich GR, IT, UK, FR, IE, EE, BE, SE, EMBL-EBI, LU, DK, ES January 2023 -  December 2024
23-SYBEL Systems Biology for ELIXIR Ulrike Wittig Heidelberg Institute for Theoretical Studies (HITS) NL, SI, SE, UK, PT, LU, CZ, EMBL-EBI, GR, NO January 2023 -  December 2024
23-SCONE Single-Cell Omics Network for ELIXIR Naveed Ishaque Charité Berlin FI, SE, IT, CH, EMBL-EBI, SI, NL, UK, BE, GR, PT, IT, IL, NO, ES, FR, CZ, LU January 2023 -  December 2024
 22-TP4  Training Capacity Building  Bérénice Batut, Renato Alves  University of Freiburg, EMBL Heidelberg CH, EMBL-EBI, GR, IT, NL, SE, SI, PT, UK January 2022 -  December 2023
 22-TP2 Gap analysis, training materials development and training delivery  Daniel Wibberg, Bérénice Batut Bielefeld University, University of Freiburg  BE, CH, EMBL-EBI, FI, GR, IE, IT, NL, PT, SE, SI, SP, UK January 2022 -  December 2023
 22-RDservices  ELIXIR Rare Disease Community services and international collaborations  Sven Olaf Twardziok, Naveed Ishaque Charité Berlin   BE, CH, FR, GR, IT, LU, NL, SI, ES, UK January 2022 -  December 2023
 22-FHD The Federated EGA framework: supporting sensitive data management across the ELIXIR Nodes  Jan Korbel  EMBL Heidelberg  BE, CH, CZ, EMBL-EBI, ES, FI, GR, HU, IT, LU, NL, NO, PT, SE, SI, SP; UK January 2022 -  December 2023
 22-ECP3 Container Orchestration  Alexander Sczyrba Bielefeld University   CH, CZ, EMBL-EBI, FI, GR, IT, NL January 2022 -  December 2023
 22-ECP2 ELIXIR Hybrid Cloud  Alexander Sczyrba, Jan Krüger, Nils Hoffmann, Alexander Goesmann, Marius Dieckmann  Bielefeld University, Justus-Liebig University Gießen CZ, EMBL-EBI, IT, NL, UK  January 2022 -  December 2023
 22-ETP4 Software Best Practices  Björn Grüning  University of Freiburg  GR, IT, NL, NO, SP, SE, SP January 2022 -  December 2023
22-ETP3 The bio.tools registry and the EDAM ontology Björn Grüning University of Freiburg CZ, DK, ES, FR, NL, NO, SP January 2022 -  December 2023
22-ETP1 Packaging, containerisation & deployment Björn Grüning University of Freiburg BE, EMBL-EBI, FR, GR, NO, IT, UK January 2022 -  December 2023
22-APICURON APICURON integration with curation databases Ulrike Wittig, Maja Rey Heidelberg Institute for Theoretical Studies (HITS) EMBL-EBI, IT, UK January 2022 -  December 2023
2021-containerservices Making container services integratable, sustainable and widely adopted Björn Grüning, Bérénice Batut, Beatriz Serrano-Solano, Sven Twardziok University of Freiburg, Charité Berlin BE, CH, CZ, EBI, ES, IT, FI, FR, GR, NL, UK June 2021 - May 2023
2021-plants Increasing Plant data findability and reuse beyond ELIXIR Uwe Scholz, Sebastian Beier, Matthias Lange, Heidrun Gundlach, Björn Usadel Leibniz Institute for Plant Genetics and Cultured Plant Research (IPK) Gatersleben; Helmholtz Center Munich, Forschungszentrum Jülich FR, BE, EBI, GR, IT, NL, PT, SL, UK June 2019 - May 2021
2021-Galaxy Strengthen Data Management in Galaxy Björn Grüning, Beatriz Serrano-Solano University of Freiburg BE, CH, CZ, ES, FR, IL, IT, NL, NO, SL, UK June 2021 - May 2023
2021-IDPTools Tools Platform Ecosystem Michael Turewicz, Björn Grüning Ruhr University Bochum, University of Freiburg IT, BE, HU, ES, GR, CY June 2021 - May 2023
2021-Proteomics Increasing the translational value of public proteomics datasets: Automatic metadata-driven reanalysis in cloud infrastructures Michael Turewicz, Julian Uszkoreit, Oliver Kohlbacher, Timo Sachsenberg Ruhr University Bochum, University of Tübingen BE, CZ, DK, EMBL-EBI, FI, FR, HU, IT, NL, SE June 2021 - May 2023
2021-ToolsEcosystem Tools Platform Ecosystem Björn Grüning University of Freiburg FR, NO, DK, ES, EMBL-EBI, UK, BE, ES, IT June 2021 - May 2023
2021-hCNVbundles Reference hCNV datasets, use-case workflows and benchmarking Björn Grüning University of Freiburg CH, FR, ES, UK June 2021 - May 2023
2021-hCNVexchange Beacon and beyond — Implementation-driven standards and protocols for CNV discovery and data exchange Björn Grüning University of Freiburg CH, FR, EMBL-EBI, ES, UK June 2021 - May 2023
2021-Impact Impact evaluation at Node-level - getting it done Irena Maus Bielefeld University PT, NO, BE, IT, GR, NL, CH, UK, FR, CZ, FI, EBI, ES, IL June 2021 - May 2023
2020-microbialbiotech Microbial Biotechnology Community Alexander Goesmann Justus-Liebig University Giessen NL, FR, UK, GR, FI, PT, SI, CH, EBI June 2020 - May 2022
2019-Proteomics Comparison, benchmarking and dissemination of proteomics data analysis pipelines Martin Eisenacher, Oliver Kohlbacher Ruhr University Bochum, University of Tübingen DK, EBI, NL, ES, FR, SE, IT, CZ June 2019 - May 2021
2019-plants FONDUE- FAIR-ification of Plant Genotyping Data and its linking to Phenotyping using ELIXIR Platforms Uwe Scholz, Heidrun Gundlach, Klaus Mayer Leibniz Institute for Plant Genetics and Cultured Plant Research (IPK) Gatersleben, Helmholtz Center Munich FR, BE, NL, EBI June 2019 - May 2021
2019-Metabolomics Standardizing the fluxomics workflows Oliver Kohlbacher University of Tübingen GR, ES, NL, IT, FR, UK, EBI, FI, SE, EE, BE, CH, CZ June 2019 - May 2021
2019-ETP1 Packaging, containerisation & deployment Björn Grüning University of Freiburg ES, EBI, BE, FR, IT, NO, DK June 2019 - May 2021
2019-Galaxy Expanding the Galaxy: meeting (the needs of) ELIXIR Communities Björn Grüning University of Freiburg BE, EBI, FR, UK, NL, ES, PT June 2019 - May 2021
2019-ECP3 ELIXIR hybrid cloud Alexander Sczyrba Bielefeld University CZ, EBI, ES, FI, IT, UK, NL, LU, DK, PT, NO June 2019 - May 2021
2019-Containers Deploying Reproducible Containers and Workflows Across Cloud Environments - Strategic Implementation Study Alexander Goesmann, Alexander Sczyrba, Christian Lawerenz, Björn Grüning Justus-Liebig University Giessen, Bielefeld University, Charité Berlin, University of Freiburg EBI, ES, FI, FR, DK, BE, SE, IT, CZ, CH, UK, NL, SI, PT, NO, GR June 2019 - May 2021
2018-Widening Widening Node participation in Implementation Studies Frank Oliver Glöckner, Alexander Goesmann, Alexander Sczyrba Justus-Liebig University Giessen, Jacobs University Bremen, Bielefeld University   June 2018 - May 2019
2018-Proteomics Crowd-sourcing the annotation of public proteomics datasets to improve data reusability Martin Eisenacher, Oliver Kohlbacher Ruhr University Bochum, University of Tübingen BE, CH, SE, NL, ES, NO, DK, FR, EBI June 2018 - May 2020
2018-Proteome Extending open proteomics data analysis pipelines in the cloud: Additional tools and focus on scalability, supporting the dramatic growth of public proteomics data Oliver Kohlbacher University of Tübingen BE, DE, ES, FR, EBI August 2018 - July 2019
2018-Metabolomics ELIXIR Implementation Study on Metabolite Identification Steffen Neumann, Christoph Steinbeck Leibniz Institute of Plant Biochemistry, Halle, Saale, Cheminformatics and Computational Metabolomics, Friedrich-Schiller University, Jena NL, EBI, FR, ES, GR, SE, IT, CH, BE, EE, UK June 2018 - July 2019
2018-Galaxy Galaxy Community Implementation Study Björn Grüning University of Freiburg BE, FR, NO, IT, CH, NL, ES, UK, CZ, SI September 2018- August 2020
2018-Clearinghouse Establishment of an ELIXIR Contextual Data Clearinghouse Frank Oliver Glöckner Jacobs University Bremen NO, EBI, IT June 2018- May 2020
2018-Biocontainers Development of Architecture for Software Containers at ELIXIR and its use by EXCELERATE use-case communities Björn Grüning University of Freiburg EBI, ES, BE, FR, DK, FR, IT January 2018- June 2019
2017-Proteome Mining the Proteome: Enabling Automated Processing and Analysis of Large-Scale Proteomics Data Martin Eisenacher, Oliver Kohlbacher Ruhr University Bochum, University of Tübingen EBI January 2017- June 2018
2017-Integration Integration of ELIXIR Germany into ELIXIR activities Alfred Pühler; Andreas Tauch, Oliver Kohlbacher, Rolf Backofen,Steffen Neumann, Uwe Scholz, Frank Oliver Glöckner Bielefeld University, University of Tübingen,Leibniz Institute of Plant Biochemistry, Halle, Saale, Leibniz Institute for Plant Genetics and Cultured Plant Research, Gatersleben, Jacobs University Bremen   October 2017 - March 2019
2017-Datamovement ELIXIR Proof of concept study on the availability of big datasets on remote compute infrastructure Alexander Sczyrba Bielefeld University SE, CZ, EBI, FI October 2017 - March 2018

Commissioned Services on the ELIXIR Website