Commissioned Services of ELIXIR Germany

ELIXIR's Commissioned Services are technical projects that guide future service development, drive standards adoption and connect ELIXIR Nodes. The following table provides informations about Commissioned Services with German contributions.

Commissioned Services
Name of Study Project name Principal Investigator Institutes Nodes involved Duration
2020 Microbial Biotechnology Community Alexander Goesmann Justus-Liebig University Giessen NL, FR, UK, GR, FI, PT, SI, CH, EBI June 2020 - May 2022
2019-Proteomics Comparison, benchmarking and dissemination of proteomics data analysis pipelines Martin Eisenacher; Oliver Kohlbacher Ruhr University Bochum; University of Tübingen DK, EBI, NL, ES, FR, SE, IT, CZ June 2019 - May 2021
2019-plants FONDUE- FAIR-ification of Plant Genotyping Data and its linking to Phenotyping using ELIXIR Platforms Uwe Scholz, Heidrun Gundlach, Klaus Mayer Leibniz Institute for Plant Genetics and Cultured Plant Research (IPK) Gatersleben; Helmholtz Center Munich FR, BE, NL, EBI June 2019 - May 2021
2019-Metabolomics Standardizing the fluxomics workflows Oliver Kohlbacher University of Tübingen GR, ES, NL, IT, FR, UK, EBI, FI, SE, EE, BE, CH, CZ June 2019 - May 2021
2019-ETP1 Packaging, containerisation & deployment Björn Grüning University of Freiburg ES, EBI, BE, FR, IT, NO, DK June 2019 - May 2021
2019-Galaxy Expanding the Galaxy: meeting (the needs of) ELIXIR Communities Björn Grüning University of Freiburg BE, EBI, FR, UK, NL, ES, PT June 2019 - May 2021
2019-ECP3 ELIXIR hybrid cloud Alexander Sczyrba Bielefeld University CZ, EBI, ES, FI, IT, UK, NL, LU, DK, PT, NO June 2019 - May 2021
2019-Containers Deploying Reproducible Containers and Workflows Across Cloud Environments - Strategic Implementation Study Alexander Goesmann; Alexander Sczyrba; Christian Lawerenz; Björn Grüning Justus-Liebig University Giessen; Bielefeld University; Charité Berlin; University of Freiburg EBI, ES, FI, FR, DK, BE, SE, IT, CZ, CH, UK, NL, SI, PT, NO, GR June 2019 - May 2021
2018-Widening Widening Node participation in Implementation Studies Frank Oliver Glöckner; Alexander Goesmann; Alexander Sczyrba Justus-Liebig University Giessen; Jacobs University Bremen; Bielefeld University   June 2018 - May 2019
2018-Proteomics Crowd-sourcing the annotation of public proteomics datasets to improve data reusability Martin Eisenacher; Oliver Kohlbacher Ruhr University Bochum; University of Tübingen BE, CH, SE, NL, ES, NO, DK, FR, EBI June 2018 - May 2020
2018-Proteome Extending open proteomics data analysis pipelines in the cloud: Additional tools and focus on scalability, supporting the dramatic growth of public proteomics data Oliver Kohlbacher University of Tübingen BE, DE, ES, FR, EBI August 2018 - July 2019
2018-Metabolomics ELIXIR Implementation Study on Metabolite Identification Steffen Neumann; Christoph Steinbeck Leibniz Institute of Plant Biochemistry, Halle, Saale; Cheminformatics and Computational Metabolomics, Friedrich-Schiller University, Jena NL, EBI, FR, ES, GR, SE, IT, CH, BE, EE, UK June 2018 - July 2019
2018-Galaxy Galaxy Community Implementation Study Björn Grüning University of Freiburg BE, FR, NO, IT, CH, NL, ES, UK, CZ, SI September 2018- August 2020
2018-Clearinghouse Establishment of an ELIXIR Contextual Data Clearinghouse Frank Oliver Glöckner Jacobs University Bremen NO, EBI, IT June 2018- May 2020
2018-Biocontainers Development of Architecture for Software Containers at ELIXIR and its use by EXCELERATE use-case communities Björn Grüning University of Freiburg EBI, ES, BE, FR, DK, FR, IT January 2018- June 2019
2017-Proteome Mining the Proteome: Enabling Automated Processing and Analysis of Large-Scale Proteomics Data Martin Eisenacher; Oliver Kohlbacher Ruhr University Bochum; University of Tübingen EBI January 2017- June 2018
2017-Integration Integration of ELIXIR Germany into ELIXIR activities Alfred Pühler; Andreas Tauch; Oliver Kohlbacher; Rolf Backofen; Steffen Neumann; Uwe Scholz; Frank Oliver Glöckner Bielefeld University; University of Tübingen; Leibniz Institute of Plant Biochemistry, Halle, Saale; Leibniz Institute for Plant Genetics and Cultured Plant Research, Gatersleben; Jacobs University Bremen   October 2017 - March 2019
2017-Datamovement ELIXIR Proof of concept study on the availability of big datasets on remote compute infrastructure Alexander Sczyrba Bielefeld University SE, CZ, EBI, FI October 2017 - March 2018

Commissioned Services on the ELIXIR Website