Articles about the de.NBI network:

• Zenodo publication 11/25, "Position paper on cooperation between NFDI and de.NBI & ELIXIR-DE" by S. Barysch, I. Buchhalter, T. Dammann-Kalinowski, A. Goesmann, B. Grüning, S. Jünemann, J. Krüger, U. Kummer, C. Lawerenz,  A. Sczyrba, H. Wagener, N. Hoffmann, O. Kohlbacher,
• 1st Conference on Research Data Infrastructure 09/23, "Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities" by N. Hoffmann, I. Maus, S. Beier, P. Belmann, J. Krüger, A. Tauch, de.NBI Cloud Consortium, A. Sczyrba
• de.NBI Cloud Brochure 08/22, "Development and Operation of the Federated de.NBI Cloud" by de.NBI Cloud Group
• Zenodo publication 5/22, "de.NBI service category-specific KPI selection and criteria" by M. Turewicz, F.O. Glöckner, U. Scholz, T. Dammann-Kalinowski, M. Wittchen, de.NBI Working Group Service & Service Monitoring
  Kompetenznetzwerk Umweltwirtschaft.NRW (2022): Innovationsradar zur Klimawende 05/22, "Das Deutsche Netzwerk für Bioinformatik-Infrastruktur de.NBI" by A. Pühler
• de.NBI AI Bochure 11/21, "Future-oriented Analysis of Life Sciences Data using Artificial Intelligence" by de.NBI network
• gesundhyte.de 12/21,"Zukunftsorientierte Analyse von Forschungsdaten, Mitglieder des de.NBI-Netzwerks nutzen KI-basierte Technologien" by V. Ortseifen, P. Belmann, A. Pühler
• Biologie in unserer Zeit 08/21,  "Verstetigung des de.NBI-Netzwerks" by A. Pühler
• Briefings in Bioinformatics, 02/21, "Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases", by G., W. Müller, K. Schork, J. Uszkoreit, A. Weidemann, U. Wittig, M. Rey, C. Quast, J. Felden, F. O. Glöckner, M. Lange, D. Arend, S. Beier, A. Junker, U. Scholz, D. Schüler, H. A. Kestler, D. Wibberg, A. Pühler, S. Twardziok, J. Eils, R. Eils, S. Hoffmann, M. Eisenacher, M. Turewicz
• de.NBI COVID-19 Brochure 01/21, "Data analysis for the COVID-19 research - Contributions of the German Network for Bioinformatics Infrastructure, by de.NBI network
• gesundhyte.de 12/20, "Ein Motor für die Analyse von COVID-19-Forschungsdaten", by A. Pühler, I. Maus, V. Ortseifen, A. Tauch
• gesundhyte.de 12/20, "de.NBI Cloud als akademische Lösung für Lebenswissenschaftler", by C. Lawerenz, A. Sczyrba
• gesundhyte.de 12/20, "Bioinformatik: Junge Frauen brauchen Vorbilder", Interview with Janine Felden
• de.NBI Highlight Brochure (English) 08/20, "Data analysis for insights into complex biological systems - Highlights from the German Network for Bioinformatics Infrastructure", by all de.NBI members
• Deutsche Universitätszeitung (DUZ) 07/20, "Es muss sehr viel mehr passieren" - Interview with A. Pühler
• de.NBI Highlight Brochure (German) 02/20, "Von der Datenanalyse zum verstehen komplexer biologischer Systeme - Highlights aus dem Deutschen Netzwerk für Bioinformatik-Infrastruktur", by all de.NBI members
• White paper 01/20, "de.NBI in the context of artificial intelligence", de.NBI CCU 
• Laborjournal 12/2019: "Auf das richtige Werkzeug kommt es an“ (Methoden-Special im Laborjournal), de.NBI and ELIXIR mentioned as resources p 50 ff.
• F1000 Research 11/19, "The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR" by D. Wibberg, B. Batut, P. Belmann, J. Blom, F. O. Glöckner, B. Grüning, N. Hoffmann, N. Kleinbölting, R. Rahn, M. Rey, U. Scholz, M. Sharan, A. Tauch, U. Trojahn, B. Usadel, O. Kohlbacher
• F1000 Research 06/19, "de.NBI Cloud federation through ELIXIR AAI" by P. Belmann, B. Fischer, J. Krüger, H. Rasche, M. Prinz, M. Hanussek, M. Lang, F. Bartusch, B. Gläßle, J. Krüger, A. Pühler and A. Sczyrba
• Plattform Life Sciences 01/19, "Auswertung großer Datenmengen in den Lebenswissenschaften", by A. Pühler
• Biologie in unserer Zeit! 02/19, "Big Data in der Biologie: kein Problem mehr!", by B. Gemeinholzer, J. Nieschulze, A. Tauch, A. Goesmann
• BIOSpektrum 11/18, "SILVA – Referenzdatensätze für den Nachweis von Mikroorganismen", by F. O. Glöckner & J. Peplies
• Atlas of Science 08/18, "Bioinformatics solutions for big data analysis in life sciences presented by the German network for bioinformatics infrastructure", by A. Pühler & R. Alkhateeb
• F1000 08/18, "Common ELIXIR Service for Researcher Authentication and Authorisation", among others by P. Belmann & A. Sczyrba
• Cell Systems, 05/18, "Community-Driven Data Analysis training for Biology", among others B. Batut, A. Bagnacani, A. Erxleben, T. Houwaart, D. Yusuf, Galaxy Training Network, R. Backofen, and B. Grüning
• Ärzteblatt 04/18, "Neue Open-Source-Platt­form für die Analyse von Big Data in den Lebens­wissenschaften", by B. Grüning
• BIOSpektrum 04/18, "Umgang mit großen Datenmengen in den Lebenswissenschaften (Page 199)", by A. Pühler
• Systembiologie 12/17, "BioInfra.Prot – Bioinformatik für die Proteomforschung", by M. Turewicz and M. Eisenacher
• Systembiologie 12/17, "de.NBI erfolgreich etabliert", by Y. Pfeiffenschneider
• Briefings in Bioinformatics 10/17, "A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects", by G. Mayer, C. Quast, J. Felden, M. Lange, M. Prinz, A. Pühler, C. Lawerenz, U. Scholz, F. O. Glöckner, W. Müller, K. Marcus, M. Eisenacher
• de.NBI Handbook 09/17, "Handbook of the German Network for Bioinformatics Infrastructure", by all de.NBI members
• Git Laborportal 04/17, "Cloud-Computing in der Bioinformatik", by C. Lawerenz, A. Sczyrba and A. Pühler
• Briefings in Bioinformatics 04/17, "Bioinformatics in Germany: toward a national-level infrastructure", by A. Tauch
• LaborPraxis 03/17, "Big Data im Life-Science-Labor", by Dr. Ilka Ottleben
• Gesundheitsindustrie BW 03/17, "de.NBI – Netzwerk für Bioinformatik-Infrastruktur wird weiter ausgebaut", by H. Lehmann & O. Kohlbacher
• BIOSpektrum 01/17, "de.NBI – ein Deutsches Netzwerk für Bioinformatik-Infrastruktur", by A. Pühler
• Systembiologie 04/16, "Deutsches Netzwerk für Bioinformatik-Infrastruktur – de.NBI", by A. Pühler
• Systembiologie 04/16, "RNA-Bioinformatik unter einem Dach – das RNA Bioinformatik Service Zentrum", by B. Grüning
• Systembiologie 04/16, "BRENDA – Von der Datenbank zum Kompetenzzentrum", by D. Schomburg and I. Schomburg
• Systembiologie 04/16, "NBI-SysBio – Der de.NBI Datenmanagement Knoten", by W. Müller
• Systembiologie 04/16, "Entwicklung von Software-Lösungen für Mikrobielle Bioinformatik", by A. Goesmann
• labor&more 02/16, "de.NBI und GFBio - Bioinformatische Infrastrukturen zum Management und zur Analyse großer biologischer Datenmengen in den Lebenswissenschaften", by A. Tauch and F. O. Glöckner
• BIOSpektrum 02/15, "Deutsches Netzwerk für Bioinformatik-Infrastruktur (de.NBI) - Vernetzung von Bioinformatik-Infrastrukturen in Deutschland", by A. Pühler

Special Issue in Journal of Biotechnology - Vol 265, 10 November 2017

Bioinformatics Solutions for Big Data Analysis in Life Sciences presented by the German Network for Bioinformatics Infrastructure

• Bioinformatics solutions for big data analysis in life sciences presented by the German network for bioinformatics infrastructure, A. Pühler
• A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies, J. Yu, J. Blom, S.P. Glaeser, S. Jaenicke,T. Juhre, O. Rupp, O. Schwengers, A. Goesmann
• Bioinformatics for NGS-based metagenomics and the application to biogas research, S. Jünemann, N. Kleinbölting, S. Jaenicke, C. Henke, J. Hassa, J. Nelkner, Y. Stolze, S.P. Albaum, A. Schlüter, A. Goesmann, A. Sczyrba, and J. Stoye
• Challenges and perspectives of metaproteomic data analysis, R. Heyer, K. Schallert, R. Zoun, B. Becher, G. Saake, and D. Benndorf
• Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives,T. Schmutzer, M.E. Bolger, S. Rudd, J. Chen, H. Gundlach, D. Arend, M. Oppermann, S. Weise, M. Lange, S. Spannagl, B. Usadel, K.F.X. Mayer, and U. Scholz
• From plant genomes to phenotypes, M. Bolger, R. Schwacke, H. Gundlach, T. Schmutzer,J. Chen, D. Arend, M. Oppermann, S. Weise, M. Lange, F. Fiorani, M. Spannagl, U. Scholz, K. Mayer,and B. Usadel
• OTP: An automatized system for managing and processing NGS data, E. Reisinger, L. Genthner, J. Kerssemakers, P. Kensche, S. Borufka, A. Jugold, A. Kling, M. Prinz, I. Scholz, G. Zipprich, R. Eils, C. Lawerenz and J. Eils
• Phenotype databases for genetic screens in human cells, B. Rauscher, E. Valentini, U. Hardeland, Michael Boutros
• Workflows for microscopy image analysis and cellular phenotyping,T. Wollmann, H. Erfle, R. Eils, K. Rohr, M. Gunkel
• RNA-bioinformatics: Tools, services and databases for the analysis of RNA-based regulation, R. Backofen, J. Engelhardt, A. Erxleben, J. Fallmann, B. Grüning, U. Ohler, N. Rajewsky, and P.F. Stadler
• Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments, S.C. Lott, M. Wolfien, K. Riege, A. Bagnacani, O. Wolkenhauer, S. Hoffmann, and W.R. Hess
• Recent advances in RNA folding ,J. Fallmann, S. Will, J. Engelhardt, B. Grüning, R. Backofen, and P.F. Stadler
• Strategies for analyzing bisulfite sequencing data, K. Wreczycka, A. Gosdschan, D. Yusuf, B. Grüning, Y. Assenov and A. Akalin
• BioInfra.Prot: A comprehensive proteomics workflow including data standardization, protein inference, expression analysis and data publication, M.Turewicz, M. Kohl, M. Ahrens, G. J. Uszkoreit, W. Naboussi, T. Bracht, D.A. Megger, B. Sitek, K. Marcus and M. Eisenacher
• Computational proteomics tools for identification and quality control, D. Kopczynski, A. Sickmann, and R. Ahrends
• Lipidomics informatics for life-science, D. Schwudke, A. Shevchenko, N. Hoffmann, and R. Ahrends
• Bioinformatics can boost metabolomics research, R. Meier, C. Ruttkies, H. Treutler and S. Neumann
• OpenMS – A platform for reproducible analysis of mass spectrometry data, J. Pfeuffer, T. Sachsenberg, O. Alka, M. Walzer, A. Fillbrunn, L. Nilse, O. Schilling, K. Reinert and O. Kohlbacher
• KNIME for reproducible cross-domain analysis of life science data , A. Fillbrunn, C. Dietz, J. Pfeuffer, R. Rahn, G.A. Landrun, and M.R. Berthold
• The SeqAn C++ template library for efficient sequence analysis: A resource for programmers, K. Reinert, T.H. Dadi, M. Ehrhardt, H. Hauswedell, S. Mehringer, R. Rahn, J. Kim, C. Pockrandt, J. Winkler, E. Siragusa, G. Urgese and D. Weese
• 25 years of serving the community with ribosomal RNA gene reference databases and tools, F.O.Glöckner, P. Yilmaz, C. Quast, J.Gerken, A. Beccati, A. Ciuprina, G. Bruns, P. Yarza, J. Peplies, R. Westram and W. Ludwig
• Terminology supported archiving and publication of environmental science data in PANGAEA, M.Diepenbroek, U. Schindler, R. Huber, S. Pesant, M. Stocker, J. Felden, M. Buss and M. Weinrebe
• Mobilization and integration of bacterial phenotypic data—Enabling next generation biodiversity analysis through the BacDive metadatabase, L.C. Reimer, C. Söhngen, A. Vetcininova and Jörg Overmann
• The BRENDA enzyme information system–From a database to an expert system, I. Schomburg, L. Jeske, M. Ulbrich, S. Placzek, A. Chang and D. Schomburg
• From cheminformatics to structure-based design: Web services and desktop applications based on the NAOMI library, S. Betz, T. Inhester, F. Lauck, K. Sommer, M.M. von Behren, R. Fährrolfes, F. Flachsenberg, A. Meyder, E. Nittinger, T. Otto, M. Hilbig, K.T. Schomburg, A. Volkamer and M. Rarey
• COPASI and its applications in biotechnology, F.T. Bergmann, S. Hoops, B. Klahn, U. Kummer, P. Mendes, J. Pahler and S. Sahle
• Use of CellNetAnalyzer in biotechnology and metabolic engineering, A. von Kamp, S. Thiele, O. Hädicke and S. Klamt
• Data management and data enrichment for systems biology projects, U. Wittig, M. Rey, A. Weidemann and W. Müller