Tools for Plant Data

GBIS/I - The information system of the German Genebank
Gear / Tracy - genome analysis server
GLASSgo - finding sRNA homologs
Goslin - Tool for lipid shorthand name parsing and normalization
gtrellis - Genome level Trellis graph
haarz: Adaptive variant caller
HilbertCurve - easy and flexible way to visualize data through Hilbert curve
IHW - Independent hypothesis weighting
KNIME - A modern platform for data analytics
LIVIVO - interdisciplinary discovery service for literature and information
MapMan - Map Gene / Protein / Metabolite Data on biological Pathways
MassBank - repository of mass spectra of small chemical compounds
Mercator - annotate and classify plant protein and DNA sequences
MetFrag - In silico fragmentation for computer assisted identification of metabolite mass spectra
metilene: Differential methylation
muvac: Variant calling pipeline
PATCH - Collection of software solutions for pangenome analyses
PlabiPD - Functional annotation of plant genomes
Plant Genome Annotation
PlantsDB - Holds structured and interconnected genome and gene data for prominent plant species

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