MacPepDB
MacPepDB is a database that enables fast and comprehensive access to all theoretically generated tryptic peptides derived from the UniProtKB. It allows users to query peptide sequences across organisms and proteomes, facilitating proteomics research that relies on in silico digestion and peptide-centric analyses.
Key benefits
- Fast retrieval of tryptic peptides derived from UniProtKB proteins
- Organism- and proteome-wide peptide search capabilities
- Supports peptide-centric workflows in proteomics research
- Facilitates theoretical digestion-based analyses
- Web-accessible database for immediate querying
Applications
- In silico tryptic digestion of UniProtKB protein entries
- Peptide lookup across species and proteomes
- Support for mass spectrometry-based proteomics workflows
- Assessment of peptide uniqueness and proteome coverage
- Database support for method development and benchmarking
Intended use
MacPepDB is intended for researchers in proteomics, bioinformatics, and computational biology who require rapid access to theoretical tryptic peptides for database searches, method development, or peptide-centric analyses. It is particularly suited for users working with mass spectrometry data and proteome-wide peptide investigations.
Access the database: Website
Funding: Service provision and maintenance funded by de.NBI.