Tools for Microbial Data

MDOA Toolbox – Multi-Dimensional-Omics tools
MediaDive - The world's largest collection of cultivation media
MeltDB - framework for the analysis of for raw GC- and LC-MS metabolome data sets
Mercator - annotate and classify plant protein and DNA sequences
Metagenomics Toolkit – scalable, data-agnostic workflow for the automated analysis of metagenomic datasets
Metaproteomics Consulting – From Study Design to Bioinformatic Analysis
MetFrag - In silico fragmentation for computer assisted identification of metabolite mass spectra
Microbiome Analysis Toolbox
mOTUs - quantification of known (sequenced) and unknown microorganisms at species-level resolution from shotgun sequencing data
MPA Cloud - MetaProteomeAnalyzer - identification of taxonomic and functional relationships between identified proteins
NGLess - domain-specific language for next-generation sequencing data processing
PATCH - Collection of software solutions for pangenome analyses
PLAST - Pangenome Local Alignment Search Tool
Platon - detection of plasmid contigs within bacterial draft genomes
proGenomes - consistent taxonomic and functional annotations for bacterial and archaeal genomes
Prophane - automatic annotation of metaproteomes
ProtGraph – Protein Graph Generation from UniProtKB Entries
PUBLISSO - open access publishing platform for research articles
QuPE - framework for quantitative proteomics experiments
ReferenceSeeker - determination of closely related reference genomes

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