CloWM - The Cloud-based Workflow Manager
The Cloud-based Workflow Manager (CloWM /klaʊm/) is an open-source, free-of-charge platform designed to streamline data-intensive scientific analysis tasks. It offers the seamless integration of (1) curated, scientific workflows written in the Nextflow DSL, (2) robust data storage, (3) a highly scalable compute layer for data-intensive analysis tasks and a (4) user-friendly interface. CloWM already contains several best-practice workflows covering a broad spectrum of research fields and tasks, such as metagenomics (WGS and 16S), human-variation-analysis, infectious diseases (SARS-CoV2, Mpox, Influenza A+B), meta-barcoding, genome assembly, transcriptomics, basecalling and phylogenomics, to mention just a few. Some of these workflows are exclusively available on CloWM while others are sourced from well-known open-source repositories like nf-core or EPI2ME Labs.
Website
Github
bio.tools
Funding: Continuing development, support, and maintenance partially funded by de.NBI