Heidelberg Center for Human Bioinformatics (HD-HuB)

MOFA – Multi-Omics Factor Analysis
mOTUs - quantification of known (sequenced) and unknown microorganisms at species-level resolution from shotgun sequencing data
MuVi - a multi-view latent variable model with domain-informed structured sparsity
NGLess - domain-specific language for next-generation sequencing data processing
OmniPath - database of causal protein-protein interactions
OTP - comprehensive framework for NGS project organization and processing
PanCancer alignment workflow
proGenomes - consistent taxonomic and functional annotations for bacterial and archaeal genomes
PROGENy - infer pathway activity from gene expression
rGREAT - Automatic Genomic Regions Enrichment of Annotations Tool (GREAT)
rhdf5 / Rhdf5lib - an interface between HDF5 and R
RNA-seq end-to-end workflow
RnBeads - R package for comprehensive analysis of DNA methylation data
Roddy - a framework for large scale NGS processing
SIAMCAT - modular framework for the statistical inference of associations between microbial communities and host phenotypes
SIDER - resource that contains information on marketed medicines and their recorded adverse drug reactions
SMART - resource providing simple identification and extensive annotation of protein domains via sequence homology searches
SNV calling pipeline
STITCH - Resource to explore known and predicted interactions of chemicals and proteins
STRING - Search Tool for the Retrieval of Interacting Genes/Proteins

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