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Cloud-based data analysis in metabolomics (PhenomeNal)
COPASI - Creating and solving mathematical models of biological processes
Crop Analysis Tools Suite (CATS)
CWLab - simplified deployment of the Common Workflow Language using a GUI
DecompPipeline - A preprocessing pipeline for preparing DNA methylation data for MeDeCom
DELLY - workflow for the discovery of germline and somatic structural variants
DESeq2 - R/Bioconductor package for differential gene expression analysis
DEXSeq - analysis of alternative exon usage
Dorothea - human and mouse TF regulons
E-CRISP - Design of CRISPR constructs
e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
EDGAR - comparative genomics platform
eggNOG - database of nested orthologous gene groups (NOGs)
EMGB - Exploratory MetaGenome Browser, a CWL-based workflow for metagenome analysis
EnrichedHeatmap - visualize enrichment of genomic signals on specific target regions
Enterotyping - determine enterotypes in new studies
EPIFANY - Bayesian protein inference
EURISCO - A search catalogue providing information about ex situ plant collections maintained in Europe
European Galaxy Server – Web-Based Platform for Reproducible Data Analysis
FactorViz - A graphical user interface for interpretation of deconvolution results of MeDeCom

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