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CellNetAnalyzer for python (CNApy) - an advanced graphical user interface for exploration and computational analysis of metabolic network models
circlize - visualization of huge amounts of information
Cloud-based data analysis in metabolomics (PhenomeNal)
COPASI - Creating and solving mathematical models of biological processes
Crop Analysis Tools Suite (CATS)
CWLab - simplified deployment of the Common Workflow Language using a GUI
de.STAIR-Rostock - TRAPLINE: A tool for RNAseq data processing
de.STAIR-Rostock - TriplexRNA: A database of cooperating miRNAs and mutual targets
DecompPipeline - A preprocessing pipeline for preparing DNA methylation data for MeDeCom
DELLY - workflow for the discovery of germline and somatic structural variants
DESeq2 - R/Bioconductor package for differential gene expression analysis
DEXSeq - analysis of alternative exon usage
DIEGO: Differential splicing
Dorothea - human and mouse TF regulons
E-CRISP - Design of CRISPR constructs
e!DAL-PGP - Plant Genomics and Phenomics Research Data Repository
ECF Hub - Extracytoplasmic function sigma factors classification
EDGAR - comparative genomics platform
eggNOG - database of nested orthologous gene groups (NOGs)
EMGB - CWL-based workflow for metagenomics analyses

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